Basic Information

Insect: Drosophila basisetae
Gene Symbol: salm
Assembly: GCA_035041595.1
Location: JAWNLB010000116.1:7305165-7312488[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.5e-06 0.00015 21.9 1.7 1 23 371 393 371 393 0.98

2 8 3.5e-05 0.0021 18.2 3.5 1 23 399 421 399 421 0.98

3 8 2.4 1.5e+02 3.0 2.5 5 23 682 700 679 700 0.84

4 8 3.6e-08 2.2e-06 27.6 0.2 1 23 706 728 706 728 0.98

5 8 0.0011 0.067 13.5 0.9 1 23 738 760 738 760 0.98

6 8 0.055 3.4 8.2 0.1 2 23 977 999 977 999 0.96

7 8 1.2e-05 0.00072 19.7 5.0 1 23 1144 1166 1144 1166 0.96

8 8 9.4e-08 5.8e-06 26.3 0.7 1 23 1172 1194 1172 1194 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.5e-06	0.00015	21.9	1.7	1	23	371	393	371	393	0.98
2	8	3.5e-05	0.0021	18.2	3.5	1	23	399	421	399	421	0.98
3	8	2.4	1.5e+02	3.0	2.5	5	23	682	700	679	700	0.84
4	8	3.6e-08	2.2e-06	27.6	0.2	1	23	706	728	706	728	0.98
5	8	0.0011	0.067	13.5	0.9	1	23	738	760	738	760	0.98
6	8	0.055	3.4	8.2	0.1	2	23	977	999	977	999	0.96
7	8	1.2e-05	0.00072	19.7	5.0	1	23	1144	1166	1144	1166	0.96
8	8	9.4e-08	5.8e-06	26.3	0.7	1	23	1172	1194	1172	1194	0.98

Sequence Information

Coding Sequence: ATGTGTTCCATATTTCGCAATCGCATCAATTATCGGGGCGCAGGAACGCGCACTGGCACCTCCAATGCCAGTGGAGGAGGTGCAGGTGGCGGTGGAGGAGGcggaggcagcaacagcagcagctcggaTCCCATTGGCGAACGGGAGAGTCTCCTGGCCAAGGAACTGAATGCggacagcaataacaatgcgGCGGATGAGACAATCGAGCCGGAAATGGAGAtggagctgcagctggaaaaggagaaggagaagcaaTCGGAGACATCACTGCCCAGCTCCGATCAGCCAGAGAATAGCAATGAGGCATTGGATCTCTCGGTCATCTCGGGCAATCGGTTGCCCAACAGTGGGCATGTGGCACTAGAAGCTTTACAACATACCAAAGTGGCGGTGGCTCAGTTTGCGGCCACGGCGCTGGCGGCGGCATCCACAGATCCCAGTGATCTGGCCATGGTGCAGTCGACCATCTTCAATGTGCAGCGACAGCATctgatgcagctgcagctcatcCAGCATCTACAGAGTCAATTGAAGCGAGCGGGGGGCGTGGTCGCCGCTCTCAGCCGGCAGGGTCAAAACTATGCCGAGCAGGATGACGATGAAGCGGGAGATGAGGCCGAAGATGTGGAAGAGTTGGAAGAGGAGCAACAACTGTCGATGCCATCCAAAGAGCCGTCGCGAGTGAACGGTGAGCGAACCGAATTGGATCATGCAAGGCTGGAGGAGAGTTCAAAGACTGATGACGAGTGCAATAGGCTGGGCGAGAGACCAAGGCGCGCCTTGGCCAGGGAAAGATCGCGGGagacgacgaagacgaagacggaGGCAGAGGTGGATGCTGAAGCCGAAGCCGAAGGCGAACACGAGCTGGCCGAGAGCGAATACAAGCCACTGATGTGCGACATTAGCTCCAGTCTGGCGTCCAGCATCATCACCAATCATGATCCGCCGCCGGCACCCAATGAGCCCAACTGCTTGGAGATGCTGCAGCGTCGCACCGAGGAGGTGCTGGACTCTGCATCGCAGAGTCTGCACGCCGCCCAGATGCAGGAGGAGTACTCGGAATATGCCACCAAGGAGGCGCAGAGTCGCGGCGAAATCTTCAAGCATCGCTGCAAATATTGTGGCAAAATCTTCGGCAGCTATTCAGCCCTGCAAATCCATTTGCGTTCGCACACGGGCGAACGACCCTTCCACTGTAATGTTTGCGGCAGCAAGTTCACCACCAAGGGCAATCTCAAGGTGCACTATCAGCGGCACACGCAGATCTTTCCGCCCATGCTGATGCCACCCGTGGTCAACGGGGTCAGTGCACCCGAGCAGTTTGCTGCCATTCGGCTGCCGTTTGTGACACCAccagcggtggcagcagcagcagcagcaccactgGCAGCACCGCCACTGGCAGCAtcactaccaccaccaccacccccacccccgCCGCCAAGCAACGAACAGTCAGCGCTGGAACAGCTACAGGAGCCGACAGCTCTGGGACGACTGCAGCAGGCCGAGGATCTGAGCAGGCCACCAGCCACCAGAGAATTATCGCAGTCACCCGAGCAAGTCACGCAACCAGCTCCGTCAACCAAGTCGCTTATCGAGCCACCAGCGCTGGTGTCGCCCGAGAAACAGGACCAGGACAAGACGAAGGACAGTCCCAAGTCCATGACACCGCCAACGCCACCAGCTCCCTcgccaacaacaccaacaactccAGCAGCAAGCAATCGTCGCAATGGTAGTGTCCGCAAGCGGCAGACAAGCCAGGCGGGTAGTCCGCCTGGCGAGGAGCACCCTCATGCTGAGCATCACTCGCACCTGGTCAAGTTGGTGCGTCGCTCGTCGGCGAGCCGGGATGGGATGACAGCGATGCCTGGCGGTGGTTTGCCTGGCGAGTATTCGTTGGCGCAGATGGAGCGTATTATTGACAAGTCGTGGGAGGATCTCATTGAGATCGATAAGACGTCGGAGACAtcgaagctgcagcagctggtcGATAATATTGAGAACAAGCTGACCGATCCCAATCAGTGCATCTTCTGTCAGAAGGTGATGTCCTGTCGCAGCTCCCTGCAGATGCACATACGCACCCATACCGGGGAGCGACCCTTTCGCTGCAAGATCTGCGGACGCGCCTTCGCCACCAAGGGCAACCTGAAGGCGCACATGAGCATCCACAAGATCAAGCCACCGATGCGCAGCCAGTTCAAGTGTCCGGTGTGCCATCAGAAGTTCTCCAACGGCATCATTCTGCAGCAGCACATACGCATCCATACCATGGACGATGGCAGTGCTGGTCATGCTCAGCTGCAGGGGCAGGGCGGCGATGTCGAACGCTTGGGCATCGAGGACCAGAACTCGAACAAGTCGATGGGCACCTCAGACACGCTGGACTTCTCGACGACCGTCTCGGATCATTCGGGTCAGCGATCGGAGTCGTCGCAGGGTGGCGACTTCGATGAGTTCATGACCATGGACAGCACGGATGATTCGCGTGACAATTCCAGCGCACTGCTCGACagggagagggagcgagaTAGACGCCTGCCTGGGCACGATGATGAGCGCTCCCGGTCGGACGATGTGGAGGGCAGCGGACGTGAAAGTGCCAGCGGTGAGATGCCCGCCATGGATCTATCATCACCATCGCCATCGGCCTCATCGCTGGCACGTCTCTTTGGTGTcggtggcggcggcaacagcggTGCAACGTGCTCAGGCACTggagtagctgctgctgctgctgctgctgcagccaatTCAGGCGGTTTGCCAATGTTGCATGGCATGCCGATGCCACCgaatctgctgctgatggccGCGGCCAGGGAGGAGATGCATGCGCTGGGCCAGACGCATGCCAAGTTTCCGCTGTTGCCCTTCGGACCGCTCGGATTAATGGGACTGCAGCCGCCCCCAAATGTGTGCAATCTGTGCTTCAAGATGCTGCCCAGCCTGGCCGCCCTCGAGAGCCATCTGCAGAGCGAACATGCCAAAGAAGTGACGGCTCCTTCCGTTCGAGCCCACTGCAACGATGCGTTATCACCCTACGGTGCAAAGCTCACTCTCAATCCAAATCTGTTTGCCAAGAAGCCGAAACCATCGTCAACGCTGGAGATGGCGCCTGCGGACCCAGTCACGCCATTGTCGGCACCCATTAAAGAGGAGCCAGAATccgatcagcagcagcagctgcagctactCGATGAGGGTGGCTGCGATAGTGGCACCAGTAGTGGTACTTCTGCTGccgctccagctcctgctggCTATCAGCATGAGGCTGCCGCCGATGCGGAGCAGTCCCTAATGAAGATGCAGTTGCATGCACATCGATTTCCAGCTGGTCCGCTGGACTTTCAGCAGGCCCTGATGTCGGCCGGCCCGCCCAGCTCTAGCTTGGATCCGCCGGTGAATAACAAGCACTTTTGTCACGTCTGTCGTCGCAATTTCAGTTCGAGTTCGGCACTGCAGATTCATATGCGCACCCACACCGGAGATAAGCCGTTTCAGTGCAATGTGTGTCAGAAGGCCTTCACCACGAAGGGTAACCTTAAGGTTCACATGGGCACGCATATGTGGACGAATCCGACGTCGCGTCGCGGCCGTCGCATGTCACTGGAGTTGCCGATGCGACCGGGACCTGGCCCGGGCCCAGGTGCCGCACATGGTGTACCAACGGCTGAGCAGGAGTTCATGCAGCGACGCCCAGAACTGTTCTTCCCATACTTGCCACCCTTCTTCAACGGAATGCCACCCAAgCCCGGCGAATTGAGTCCTGGCGCTTTTGCCAACATACCTCCACCGCATTTTGCAAATGGAGCCAAGTATCCATATCCACCGGGTCTGCTCAGCTTTCCTGGCTTTCTGGGTGGTGCTGGCGGTCATCACCAGCATCCCTATGGCGGAGTGGAGCGAGGCAACAGCAAGTCTCCCACATCGGAGCCGGCACAGAGTCCTGCTTCTCGTGAGGATGACTCGGGTCTCAGTAATAATATCTGGCATCCGCTGAGCAGCATTAAGATGGAGAGCAATCAAAATGAGAGCACTGGCAATCAGAGCGAGCAGGAACAGGAACCGGAACCAGAGCCGGAACAAGAGCAGGATCAGGAGGATAATAAGAGTGTGGGCATCGATGCGGATGCCGAGCCTGAGGCGGATGCTGAGGATTCAGCTGAGAAGTAG
Protein Sequence: MCSIFRNRINYRGAGTRTGTSNASGGGAGGGGGGGGSNSSSSDPIGERESLLAKELNADSNNNAADETIEPEMEMELQLEKEKEKQSETSLPSSDQPENSNEALDLSVISGNRLPNSGHVALEALQHTKVAVAQFAATALAAASTDPSDLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAGGVVAALSRQGQNYAEQDDDEAGDEAEDVEELEEEQQLSMPSKEPSRVNGERTELDHARLEESSKTDDECNRLGERPRRALARERSRETTKTKTEAEVDAEAEAEGEHELAESEYKPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYATKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLMPPVVNGVSAPEQFAAIRLPFVTPPAVAAAAAAPLAAPPLAASLPPPPPPPPPPSNEQSALEQLQEPTALGRLQQAEDLSRPPATRELSQSPEQVTQPAPSTKSLIEPPALVSPEKQDQDKTKDSPKSMTPPTPPAPSPTTPTTPAASNRRNGSVRKRQTSQAGSPPGEEHPHAEHHSHLVKLVRRSSASRDGMTAMPGGGLPGEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSAGHAQLQGQGGDVERLGIEDQNSNKSMGTSDTLDFSTTVSDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSALLDRERERDRRLPGHDDERSRSDDVEGSGRESASGEMPAMDLSSPSPSASSLARLFGVGGGGNSGATCSGTGVAAAAAAAAANSGGLPMLHGMPMPPNLLLMAAAREEMHALGQTHAKFPLLPFGPLGLMGLQPPPNVCNLCFKMLPSLAALESHLQSEHAKEVTAPSVRAHCNDALSPYGAKLTLNPNLFAKKPKPSSTLEMAPADPVTPLSAPIKEEPESDQQQQLQLLDEGGCDSGTSSGTSAAAPAPAGYQHEAAADAEQSLMKMQLHAHRFPAGPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPGPGPGAAHGVPTAEQEFMQRRPELFFPYLPPFFNGMPPKPGELSPGAFANIPPPHFANGAKYPYPPGLLSFPGFLGGAGGHHQHPYGGVERGNSKSPTSEPAQSPASREDDSGLSNNIWHPLSSIKMESNQNESTGNQSEQEQEPEPEPEQEQDQEDNKSVGIDADAEPEADAEDSAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00525326;
90% Identity: iTF_00514342;
80% Identity: -