Basic Information

Insect: Drosophila basisetae
Gene Symbol: -
Assembly: GCA_035041595.1
Location: JAWNLB010000116.1:4394514-4398425[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00015 0.009 16.3 3.4 1 23 270 292 270 292 0.99

2 8 2.1e-06 0.00013 22.1 0.8 1 23 297 319 297 319 0.98

3 8 1e-07 6.3e-06 26.2 0.2 2 23 328 349 328 349 0.97

4 8 6.2e-07 3.8e-05 23.8 0.3 1 23 355 377 355 377 0.98

5 8 7.7e-08 4.7e-06 26.6 3.9 1 23 383 405 383 405 0.98

6 8 2.8e-07 1.7e-05 24.8 1.9 1 23 411 433 411 433 0.98

7 8 6.2e-06 0.00038 20.6 5.1 1 23 439 461 439 461 0.98

8 8 0.00021 0.013 15.8 0.5 1 21 467 489 467 490 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00015	0.009	16.3	3.4	1	23	270	292	270	292	0.99
2	8	2.1e-06	0.00013	22.1	0.8	1	23	297	319	297	319	0.98
3	8	1e-07	6.3e-06	26.2	0.2	2	23	328	349	328	349	0.97
4	8	6.2e-07	3.8e-05	23.8	0.3	1	23	355	377	355	377	0.98
5	8	7.7e-08	4.7e-06	26.6	3.9	1	23	383	405	383	405	0.98
6	8	2.8e-07	1.7e-05	24.8	1.9	1	23	411	433	411	433	0.98
7	8	6.2e-06	0.00038	20.6	5.1	1	23	439	461	439	461	0.98
8	8	0.00021	0.013	15.8	0.5	1	21	467	489	467	490	0.94

Sequence Information

Coding Sequence: atggGCTTTAAGCATGCGATGCTGCAACGCAGCTACGATCTCGCCGCATCTCCTGCCCCAGCAGAGGCGCCTCAGCAAGTTACGGATTTTAGCATCAGCCGCATTCTGGGCAACGTTGGCAAGGATACTCCAGCGAAGAAGAAGACAGCAGCGagtgctgttgctggcaacatTCTCGATCTCTCGAAGAGCagtcaacagcagccgcaggcAGTGCAGCCCTTTCAAAATGCATCGGCAAGTTATGGCTATGCTATGTTGCCACCGGATTTGCTGGCCATGGCCAGTGCAACCAAATTCTATGCGCAGTTCTTTCCACACTTGCTGCCTGCCtatgcggcagcagcagctgccgccggcTTCACAACGCCACCCACATCGCCCtatcagcaacaccaacagcagcagcagcaccagcagcaccagcagcatcatcatcagcagcagaagcgttACTTTGCCCCCTATGTGATCAACGGACAAAGTCCGACACGGCCCAAACCGAGTGCACCCAGTGTCTGCACCCGTGCGGATTGCGTGGAATGCCTGGACTACTATAGACAATTTGGAGCGGGCTACAAGCCGACGCCATTGATTTCGCCGGCGGCTTCTTCGGTCAGCAGTGCGAGCAGCTCGAGGCTCGGCCGGGCagacagcagcaccaccaacatcTCATTCACCACGGTGACCAATCTGAATCTGAgcacgacagcaacaacaacaatgacaacagcaacaacaacaccagcattGCCCAATTtagttgccaacaacaataacaacacaacgACGGCTGAGGAGATCAGCTACAAGTGTCACATCTGCGACAAGGTCTTCGGATGCTCCGAAACGCTGCAGGCGCACGAGAAGACACACAAATCGCCGCGGTACGAGTGCTCGGATTGTGGCAAAGGATTCTCGCAGCTGCgcaattataaatatcacCTGTCTGTGCATCGTGGCACGAAGGAGTTTGCTGCCGAGTGTCCGGAGTGCGGCAAGACCTTCAACGATAAGGGCTATCTGAGCAGCCACATGAAGATCCATCGCAACCGGAAGGAGTACGAGTGTCCCTACTGCCCTAAGTCCTTTAATCAGCGTGTCGCCTTCAACATGCACGTGCGCATCCACACGGGCGTCAAGCCGCACAAGTGTGCCGAATGTGGCAAGCGATTCTCCCGCAAGATGCTGCTCAAGCAGCACATGCGCACGCACAGCGGCGAGAAGCCGTATCAGTGCTCTGTTTGTGGCAAGTCCTTTGCGGATCGCAGCAATATGACGCTCCATCATCGGCTGCACTCGGGCATCAAGCCATTTAGCTGCCCGCTGTGCCCCAAGGCATTCACCAAGAAACATCACCTGAAGACGCATCTCAATTATCACACCGGCTGCAAGCCGTACGTCTGTCCACATCCCAATTGCAATCAGGCCTTTACCCAGTCCAGCAATATGCGCACCCATGCCAAGAAGTGCCAATACCGACCGTTAGACGGCGCTCAGCCATTCCCCATGccacacaagcagcagcagctgcaccaaccacaacagcagcaacaatcgctGGCGCTGCCAACAGCTGCAAGTTTTGTTATGCCACCGGCAACATTTTCCCCTGCTGCAGCCGCAATCACATTTCCGCCGGCCCAGCAAACGCTCCTCAGCAATTTGAGAACATTCCAAGCGATCTGA
Protein Sequence: MGFKHAMLQRSYDLAASPAPAEAPQQVTDFSISRILGNVGKDTPAKKKTAASAVAGNILDLSKSSQQQPQAVQPFQNASASYGYAMLPPDLLAMASATKFYAQFFPHLLPAYAAAAAAAGFTTPPTSPYQQHQQQQQHQQHQQHHHQQQKRYFAPYVINGQSPTRPKPSAPSVCTRADCVECLDYYRQFGAGYKPTPLISPAASSVSSASSSRLGRADSSTTNISFTTVTNLNLSTTATTTMTTATTTPALPNLVANNNNNTTTAEEISYKCHICDKVFGCSETLQAHEKTHKSPRYECSDCGKGFSQLRNYKYHLSVHRGTKEFAAECPECGKTFNDKGYLSSHMKIHRNRKEYECPYCPKSFNQRVAFNMHVRIHTGVKPHKCAECGKRFSRKMLLKQHMRTHSGEKPYQCSVCGKSFADRSNMTLHHRLHSGIKPFSCPLCPKAFTKKHHLKTHLNYHTGCKPYVCPHPNCNQAFTQSSNMRTHAKKCQYRPLDGAQPFPMPHKQQQLHQPQQQQQSLALPTAASFVMPPATFSPAAAAITFPPAQQTLLSNLRTFQAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00499718;
90% Identity: iTF_00596074;
80% Identity: -