Basic Information

Insect: Drosophila bakoue
Gene Symbol: -
Assembly: GCA_008044335.1
Location: VNJL01012602.1:8007-8999[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 2.1e-06 0.00025 21.9 2.3 1 23 93 115 93 115 0.98

2 7 1.3e-05 0.0016 19.4 0.5 1 23 121 143 121 143 0.96

3 7 3.5e-06 0.00042 21.2 1.2 1 23 149 171 149 171 0.98

4 7 4.1 5e+02 2.1 2.3 1 23 177 202 177 202 0.88

5 7 8.3e-06 0.001 20.0 1.7 1 23 227 249 227 249 0.98

6 7 1.1e-05 0.0013 19.6 0.7 1 23 255 279 255 279 0.94

7 7 0.00045 0.054 14.6 0.5 1 23 285 307 285 307 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	2.1e-06	0.00025	21.9	2.3	1	23	93	115	93	115	0.98
2	7	1.3e-05	0.0016	19.4	0.5	1	23	121	143	121	143	0.96
3	7	3.5e-06	0.00042	21.2	1.2	1	23	149	171	149	171	0.98
4	7	4.1	5e+02	2.1	2.3	1	23	177	202	177	202	0.88
5	7	8.3e-06	0.001	20.0	1.7	1	23	227	249	227	249	0.98
6	7	1.1e-05	0.0013	19.6	0.7	1	23	255	279	255	279	0.94
7	7	0.00045	0.054	14.6	0.5	1	23	285	307	285	307	0.98

Sequence Information

Coding Sequence: ATGGGTGCCAAGAATCTGATTATGGTggagagtgagagtgccagCGAAGAAGATCAGAGCAACAACTATGGTGTTTGCTTGGAGGATCTGCAGCTGTTCGCTCAGCTGGAGGAGGGTCTCTCTAGGGAATTGGAGCTAGATCTTCTGGAGCTGGTAACTGGGCGAGATAGTTCAGTGGAGCAGAAGCCAAAGCCTCCTCCCGGGGATACGCAACAGCAGGCAGCAATGGCTTCCAACAAACGCCGACGGTCGGGCGcatcttcctcttcttctggGCACACCTGCGACACCTGCGGCCGACGCTTCTCGGAGGCCTACAACCTGCGCATCCACAAGATGACCCACACGGACGAGAAGCCGCATGTGTGCGGCGATTGTGGCAAGGGCTTCCGGCAGCTAAACAAGCTGCGCATCCATGCCGTCACCCATACGGAGGAGCGGCCCCATAAGTGCGATATCTGTGACAAGGGCTTTCGCTATGCCAACTACTTGGCTGTCCACCGGCGACTGCATACGGGCGAGAAACCGTATCCGTGTCTGGTCAAGAACTGCCCCATGTCCTTCCACTCCATCCATGCCCGTCGCATCCACAAGAAACTGCAACATGCTGCGGATCTTGAGTTCCAGCAACTGGACAGGGAGACAGAGACCTCCTCCACTTGCACCTCGTCACTCAGCTTCACGTGTCCCGTGTGCGGGCGTGTCCTCACCGATCAGTGCTACCTGAGCACCCATCTCAAGCGGCACTACAACCAGCGGGACTTTGCCTGTCCACAGCCGGAATGCGGCAAGCGCTTCTTCAGCACCTCGGAGCTAAAGCACCACCAGATTGCACATACCCAGCATCGTCCCTTTCCCTGCCCGCTGTGTCCGGCCCGCTTCCTGCGCAAGTCCAATCGCAAGCAGCACCTCAAGGTGCACGAGCGTTGA
Protein Sequence: MGAKNLIMVESESASEEDQSNNYGVCLEDLQLFAQLEEGLSRELELDLLELVTGRDSSVEQKPKPPPGDTQQQAAMASNKRRRSGASSSSSGHTCDTCGRRFSEAYNLRIHKMTHTDEKPHVCGDCGKGFRQLNKLRIHAVTHTEERPHKCDICDKGFRYANYLAVHRRLHTGEKPYPCLVKNCPMSFHSIHARRIHKKLQHAADLEFQQLDRETETSSTCTSSLSFTCPVCGRVLTDQCYLSTHLKRHYNQRDFACPQPECGKRFFSTSELKHHQIAHTQHRPFPCPLCPARFLRKSNRKQHLKVHER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00541286;
90% Identity: iTF_00524601;
80% Identity: -