Basic Information

Insect: Drosophila bakoue
Gene Symbol: -
Assembly: GCA_008044335.1
Location: VNJL01010482.1:23418-25210[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.2 5e+02 2.1 0.1 4 16 67 79 67 81 0.88

2 13 0.0008 0.096 13.8 4.3 3 23 176 196 175 196 0.98

3 13 5.5e-06 0.00066 20.6 2.3 3 23 208 228 206 228 0.96

4 13 2.1e-05 0.0026 18.8 0.8 1 23 234 256 234 256 0.99

5 13 4.3e-06 0.00052 20.9 2.0 1 23 262 284 262 284 0.98

6 13 2e-07 2.4e-05 25.1 1.4 1 23 290 312 290 312 0.99

7 13 5.4e-06 0.00064 20.6 5.1 1 23 318 340 318 340 0.99

8 13 3e-08 3.6e-06 27.7 3.2 1 23 346 368 346 368 0.99

9 13 4.3e-07 5.2e-05 24.1 5.9 1 23 374 396 374 396 0.99

10 13 4.6e-05 0.0056 17.7 2.0 1 23 402 424 402 424 0.98

11 13 0.0013 0.16 13.1 2.5 1 23 432 454 432 454 0.98

12 13 0.00064 0.077 14.1 1.1 1 23 464 486 464 486 0.97

13 13 2.2e-05 0.0026 18.7 0.9 1 23 491 513 491 513 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.2	5e+02	2.1	0.1	4	16	67	79	67	81	0.88
2	13	0.0008	0.096	13.8	4.3	3	23	176	196	175	196	0.98
3	13	5.5e-06	0.00066	20.6	2.3	3	23	208	228	206	228	0.96
4	13	2.1e-05	0.0026	18.8	0.8	1	23	234	256	234	256	0.99
5	13	4.3e-06	0.00052	20.9	2.0	1	23	262	284	262	284	0.98
6	13	2e-07	2.4e-05	25.1	1.4	1	23	290	312	290	312	0.99
7	13	5.4e-06	0.00064	20.6	5.1	1	23	318	340	318	340	0.99
8	13	3e-08	3.6e-06	27.7	3.2	1	23	346	368	346	368	0.99
9	13	4.3e-07	5.2e-05	24.1	5.9	1	23	374	396	374	396	0.99
10	13	4.6e-05	0.0056	17.7	2.0	1	23	402	424	402	424	0.98
11	13	0.0013	0.16	13.1	2.5	1	23	432	454	432	454	0.98
12	13	0.00064	0.077	14.1	1.1	1	23	464	486	464	486	0.97
13	13	2.2e-05	0.0026	18.7	0.9	1	23	491	513	491	513	0.98

Sequence Information

Coding Sequence: ATGGAGAAGAACTGCAGGGTCTGTGCCGGCCACTCGACGGTACTCGTGGACCCCTTCTCCACGGAGATCTCCGATCCGCCGATTTCGGAAATGCTTAACTCGATTCTGGCCGAGAACTGCCGCATCAATCGGGATGCCCTGCCCCAGAAAATCTGTCCAGCCTGCCTGGTGGCCGCACAGCAAGCGTTCCACTTCAAGCACAAGTGCGAGAGAAGCTATCGTTACTTTTCCCACCTCGTCACGACGGCAACTTCCAAAGGCGAGATTCCGGATAGGAGGCGCGGCAGGAGTGCTGCAAGGGAACCGATCATTGCATTTGAAATGGTCGGCTGTGAGGACCCGCTGGACACCACAGAGCTGCCGAAAAGCGAAGGGGAAGATGGTGGACTTGTTGCGAAAGATGATGTCGATTCCAAACCGGCGGAGGCCGTTTCAGACATGCATGAAGTTCCCAAgtACCACAAGGAGCCCAGTACGACTCGCGCTTTAAAGACTCGTGTTGCCGAGAAGGAGCTATCTCTGCTATGCACTGAGTGCGGATTGACTTGTAAGTCGCATAAACTGCTGACCAGGCACATCGCGCGCCACAAGGAGAATGAGGATCCCCAGAGACCGCATTTGTGCGACACCTGTGGCCGGGGCTTCAGAACGAAGGCGCAGCTCACAATCCACACTCGAAGGCACACGGGAGAGCGACCCTTTAAATGTACCATCTGCCCGAAAGCGTACACCCACGGTCCGACACTCAGGATGCACATACTGACCCACGACGAGACCAAGGCCCACAAGTGCTTGGATTGCGAGAAGTCCTTCTACAGCATTTCCAGTCTGAGGGCTCATCAGCGGTGGCATTCGGGCGACCGACCTTACAAGTGTCCCGACTGCCAGCAGACCTTCACCAAGAACTCCGGACTGAAGCTTCACCAGCGCCTGCACACGGGTGAGCGTCCGTACAAGTGTCATCTGTGTGATCAGGCGTTCGTCCAGAACCACCATCTCGTCACCCACCTGCGCGTCCACAACAAGGATCGGCAGTTCAAGTGCCCCGACTGCGACAAGTCCTTCTTCGAGAAGTCCAACATGAAGAAGCACCAGCGCACCCATTCGGAGGTGAAGCCGTTCCAGTGTGAGGAGTGCGGCCGCGGCTTCTCGCACAATCATCACCTGAAAAACCACCTCCGCGTCCACACCGGCGAGAAGCCCTACAAGTGCGAAAGATGCGATAAGCGCTTCTGTGCAAATCAGTCGCTCGCGAAGCACATCCTCTGGCACTCAGAGAACCAGGATCGCGCCTATAATTGTTCAAAATGTCACAAGGGCTTCGACAAAATCCAGGGGTTACGAGCACACGAGAAGAAGCACCGGAGACAAGACGAGCCGAATCAGCTGTACCAGTGTCCGCACTGCGACGTCAAATTCGCATTAAAGAAGACCATGGACAAACACATTGGCAGTCATAAGATTAGGCCATATCCGTGTTCAGAATGTCCGGAGGGTTTCTTCTCCCAAAAGAGCTACAAGAAGCACCTGCGACTGCATAATCTCAAGAACTAG
Protein Sequence: MEKNCRVCAGHSTVLVDPFSTEISDPPISEMLNSILAENCRINRDALPQKICPACLVAAQQAFHFKHKCERSYRYFSHLVTTATSKGEIPDRRRGRSAAREPIIAFEMVGCEDPLDTTELPKSEGEDGGLVAKDDVDSKPAEAVSDMHEVPKYHKEPSTTRALKTRVAEKELSLLCTECGLTCKSHKLLTRHIARHKENEDPQRPHLCDTCGRGFRTKAQLTIHTRRHTGERPFKCTICPKAYTHGPTLRMHILTHDETKAHKCLDCEKSFYSISSLRAHQRWHSGDRPYKCPDCQQTFTKNSGLKLHQRLHTGERPYKCHLCDQAFVQNHHLVTHLRVHNKDRQFKCPDCDKSFFEKSNMKKHQRTHSEVKPFQCEECGRGFSHNHHLKNHLRVHTGEKPYKCERCDKRFCANQSLAKHILWHSENQDRAYNCSKCHKGFDKIQGLRAHEKKHRRQDEPNQLYQCPHCDVKFALKKTMDKHIGSHKIRPYPCSECPEGFFSQKSYKKHLRLHNLKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527456;
90% Identity: -
80% Identity: -