Basic Information

Gene Symbol
Mblk-1
Assembly
GCA_005876895.1
Location
VCKU01000004.1:22499882-22512181[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 0.004 8.4 6.1 0.0 2 21 324 345 323 347 0.91
2 2 5.7e-19 1.2e-15 56.8 0.0 1 43 640 683 640 685 0.95

Sequence Information

Coding Sequence
ATGGGTCGCAGGAAATGGAAAAATTATCAAGAGCAAGCGACGCGCAGCCAACTGAATATCGAGGAGCAACAGCCAATAGCTACAGCCGGTTCCGACGAGGACGAGGAACAGTCATACCGCAACAGccacaacaaaagcaacagcaacagaaaccaCTGTAAACCAGagaacaacaaccacaaccaccGTTTAGAGCAGCAGTTTGAGGAGGATTTTGAGAACCAAACATCACACGATTCATCACGTACAGCAACACCCATAAGTATACCATCACCACCGCCAGAACCCAACGATTGGAGACCGTCGGACAAGTGCAATTTCTGTGTTAACGGTCGCCTGCTAACGGTGAACGCCCAGGGCCAATTGGTGGCCGAAACGGTGGCACCCACAGCCACAATCCACAGCAGCAGTGCCAGCAGTAAAAGCCACATACACCACAACGGTCAACACGACAGTGACAGCAATTCGAGCGCATCGCTGCACCAGTCTGGGGCACGCAACATTGCTACTGCTGCACCACCAACAGCAACCGGCagcggcaccggcaccggcagcGGCACCGGCACGGGCACCGGTACCGGCAACTCCCTGGAACTGTACAAGCTGCTCACCCAACGGGCAGCCAAAATGACATCAATGGACTCGATGGCCGCACAGCTGGCCCAGTTCTCACTGCTGGCGGCTGACTTCAATCTGATGAACTCACTGGCcagccaacagcaacagcaacagcagcagcaacagcaacatccgCAACACAACTCGGTAACACCAACTACCTCAGAACTGCTATCGGCAGCCGCCATCAGCCCCGCACTCAAAGATACACCCAGTCCCAGCGCCGATGCCCCGCTCGATCTTAGCAGCAAGCCATCGCCAAATTCATCGATTAGCGGCGATGTAAAGTCCATCAGAGCTCTCTCGGACTGtcccacgcccacgcccacgtCGGGGCGAAGGGCCTACAGCGACGAGGACCTGAACAGGGCCCTGCAGGATGTGATGGAACCCCGCAAGGCGACCAGTCAGCACCGCTCCAGCCTGATGAGCAAGCTGGCGCAGCACGAGCTCGAGCAGGACGAGCCGGATGAGCCGGAGGACTCGGCCGACGAGGCTGAGGTGGACAGCAACGCCTCCACCCCGGCCCCGGCCTATCCAGAGTTCGACCAACGCATCGCGGCCACGGCCCAGCTCCGCAAGCTGAGCAGCCACCTGTCCGAGCACAATGGCAGCGAGGACCTGGGCGAGGATCTGGAGAGCGGGGGGCAGCACTCGCCGAAGCTGACCAGGATCCCAGGGCCCGCCAGTGCGGTGGCGCCCGGCGGCCTGCCGATTCCCATCGATGCCAATGTCCTGCTGCACACGCTCATGCTGGCGGCTGGCATCGGTGTGATGCCCAAGCTGGACGAGACCCAGACGGTGGGGGACCTGATCAAGGGCCTGCTGTCTGAAACGCCCGAGACGAGCTCCTCGCTGGACCCCAACGAGGCCAGCGAGGATCCCATACTGAAGATTCCGTCCTTCAAGGTCAGCGGGCCACCCAGCATCTCGCCCAGcatcagccacagccacaaccaccaccagcagcagcatcagcagcaccaccaccagcacccaCACCACCACAACAACCACAGCTCCAGCAGCAActcccacgcccacgcccactcGCActcccacgcccacgcccactcAAACAACAGCAATCGGAACGGGGGAAGAGAGCGCAGTCCGCACTCGGCCTCGCCGATGCTGGCCGCCGCAcaccagcaccaccatGCACACCTGCCCACCGGCCACCatgcagcagccgcagcagcggcGCACTCGCACCAGGCGCAGCTGAGCGCCCAGGAGGCGGCTGCCCTGGCAGCGGGCAAGGGCACGCGACCGAAGCGTGGCAAGTACCGCAACTACGACCGGGACAGCCTGGTGGAGGCCGTCAAGGCGGTGCAGCGCGGCGAGATGTCCGTGCATCGGGCTGGGAGCTACTACGGCGTGCCACACTCCACGCTGGAGTACAAGGTGAAGGAGCGGCACCTGATGCGGCCGCGCAAGCGCGAGCCCAAGCCCCAGCCGGACCTGGTCGGTCTGACGGGACCCGCCAACAAGGTGTGCCAGGAGAAGCTGAAGCCCGGCAACCACATCAACCACACGGGCAACCACCACGGCGTGGGCGGATCCAAGCTGAGCAACGCCCTCAAAAGCAACACCTCCTCCcaggcggcagcggcagcggcggcggccgCCGCAGCAGCGGCCTCGGCAACGGCCCCCAACGGCCTCAAGCTGCCGCTCTTCGACGGGGGCGGGCCGCCGTTGGCCTTTCAGTCCAATATGTTCTGGCCCCAGCCGAACACCAGCAATGCATACGCATTGCCCGGCCTGGACCTGCACCGCATGGCGGAGGCCATGCGCCAGCAGACGAGCCAGACGAGCGCCCATGAGCTGCCCATGAAGAGCGCCCGGGAGATAGCCGAGCACATGGACTCGGATGCCACGGATGCCAGCAGCCTGAAGAGCGATCAGAGCAGATCAGGGCATAGGCACCGTCACCGGCACAACAAAATGATGGATCTCAATgggagcaacagcagcagcagccacaacgATGGCGACGGCGAGGGCGAGACGACCCACTCGCAGATGCACAGTCCCAATCCCAGTGGCAGTCCCAATCCCCATCCCAATCCCTgccccagtcgcagtcgcagtcccggctgcagcagcagcgtcggcGGAGGCTCCATATTGCACGAGAAGCTGGCCCAGATCAAGGCCGAGCAGCTGGAGCAGCATCAGTTATAG
Protein Sequence
MGRRKWKNYQEQATRSQLNIEEQQPIATAGSDEDEEQSYRNSHNKSNSNRNHCKPENNNHNHRLEQQFEEDFENQTSHDSSRTATPISIPSPPPEPNDWRPSDKCNFCVNGRLLTVNAQGQLVAETVAPTATIHSSSASSKSHIHHNGQHDSDSNSSASLHQSGARNIATAAPPTATGSGTGTGSGTGTGTGTGNSLELYKLLTQRAAKMTSMDSMAAQLAQFSLLAADFNLMNSLASQQQQQQQQQQQHPQHNSVTPTTSELLSAAAISPALKDTPSPSADAPLDLSSKPSPNSSISGDVKSIRALSDCPTPTPTSGRRAYSDEDLNRALQDVMEPRKATSQHRSSLMSKLAQHELEQDEPDEPEDSADEAEVDSNASTPAPAYPEFDQRIAATAQLRKLSSHLSEHNGSEDLGEDLESGGQHSPKLTRIPGPASAVAPGGLPIPIDANVLLHTLMLAAGIGVMPKLDETQTVGDLIKGLLSETPETSSSLDPNEASEDPILKIPSFKVSGPPSISPSISHSHNHHQQQHQQHHHQHPHHHNNHSSSSNSHAHAHSHSHAHAHSNNSNRNGGRERSPHSASPMLAAAHQHHHAHLPTGHHAAAAAAAHSHQAQLSAQEAAALAAGKGTRPKRGKYRNYDRDSLVEAVKAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKREPKPQPDLVGLTGPANKVCQEKLKPGNHINHTGNHHGVGGSKLSNALKSNTSSQAAAAAAAAAAAAASATAPNGLKLPLFDGGGPPLAFQSNMFWPQPNTSNAYALPGLDLHRMAEAMRQQTSQTSAHELPMKSAREIAEHMDSDATDASSLKSDQSRSGHRHRHRHNKMMDLNGSNSSSSHNDGDGEGETTHSQMHSPNPSGSPNPHPNPCPSRSRSPGCSSSVGGGSILHEKLAQIKAEQLEQHQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-