Basic Information

Gene Symbol
JARID2
Assembly
GCA_005876895.1
Location
VCKU01000015.1:4660114-4668732[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-22 3.5e-19 68.9 0.0 6 89 1991 2072 1986 2072 0.93

Sequence Information

Coding Sequence
ATGGTTGTCTCAAAAGACAACAAGCGTCGCCGCAAGGAGACCGATACTCCGCCACCAGCTGCCGCGGCAGCGTCCGCGGcatccgctgctgctgctgctgctgccgtggAGTCATCACCCGAAATGCCCAAGAGAACCAAGGTGCAGGCCCAGCGTAAGTTCGCCCAGGGCCAGAGTGCGCCCAGCAGCTCGTCGAGTGGCATGGCATACAGCAGCGTCGTGGCAGCAGCGTCTGGAGCGGGAGCAGGAGGCACTGGTCCGAGCACTTCGGGTGCAGAGAGCTCGCAGCCGCCCATCGAGATACTGCCCAATAAGTGCCCCAAGCCGCAGGATTTCCTCACGTTTCTATGCTTTCGCGGCACACCCGCTTTGCCCGCTCATCTCGACTATCTGAATCAGGGTAAATCCAAGGATTCCAAAGAATCCGAGCCCACATTGCcgggcaacaacaacaataacaataacagCAGCACTAAGAAGGCCCAGAACAGTCGAGCGGTCAACAACAAGAAGAAACGTGGCAGGCCGGCCAAGGGGGGAGCGGCAGCAACCAAGAAGAGAGACGCGGAGGTTGAGCCGGAGCCACCAGCGGGGGCTGATAAGTCATCAAcagcagttgcagcagcagcatcagcagacAAAGCAGCAAGTGATAAACCCAATCTCATACCAGCAGCAGGGGCTCCAACGACAGCGACGACTTCACTGCTTCCCGGAGCTGTACGGAAGCGAGCCGAAGTGGTTACCGATGGCAATCGACGTGgcggcaggggcagggcagcACCTGAGAGCACTGGCAACACCAACAGCCACAGCCTGGGTGCGGCCACATCGTCATCCACTGCAGCAGACACCAACAAGCGTCGTTCCAACCGTTCCAGCACCAAGGAGAGCAAGGCCATAATCGATGATCTGGCGGAGGAGGAGcatgaggatgaggaggatGATGATGAATACTTTTCAGCCCATGATGCCACCTCCCGTAACGGGGACGAGGCCTCAAAGGAGGGCCCAGCGAAAGCCGAGCCAGCCAAAAGGGGGCGaaccgcagccgcagcagcagcagcagctaagAAACCATCATCGGAGCCACCATCGGTCACCGTTGCGGAGGTTGCGATCAAGGAAAAGGGACCCGCGAAGCGGTTGAGGCAACGGGAATCCCCTATATTCATACCCTCGCCAGAGTCCTCGGGCCGCATGACGCGACAGCGGGCTTTTTTCGAGCCCGTCAAAGTGCCCCCCCAGCAAGAGGAGCCAGAAAAGGCGAAAGAAGACtccaagaagaagaaggatAAGGATCCAGAGGTGGCCAAGGAACCTAAGGGAGCGCAGTCACAGCCTGAACCCGAACAGGAGCCGGCCAAGCAGCTCAAGGAAACAAAGGAGAAGACAAATTCTAGTATTTATGCCAAAGAagccaagcagcagcagcagaagcagcaacagcagcagctggagaACGGCGACAGCCAGCACGGCGCCGGCAGCAAGGGTAAAAAGAGTTTGAACGTCTTCGACTTCAGTTCCGATGATGAGCAGCCGCTGGCCAAGTCCATTAAGCTGAAGAAGGGCGCCAAGGGGCCCAGTCCCAAGAAGGGGAATGCCGCGGCGGCTCCTCCACCGGCCAGGAGTCGCAAAGCAGCCACCAAGAAGCAGGACAAAGAGAAGGAAAAAGAGGAGGAAAAGGAGAAAGAAGTTGCGGTGGCAGCAACAGTCGCAGCGACATCGGAGCCAAACAAACGCGGAGCGGCCAAGGCGGGAAAAAAGAAAGCCGAGGACCCACCGGCCGATGAACAGGACCTGGCGCCCCCCTGCCCAAAGAAAGCCACGACGAATGCCCGTCCAGGACGAAAGACAGCCAAGAGCAAAGCCACCGCGGAAGAAGCAGCCGCTGTGGAGGTGGAACCACAGCCACAGCGCTCGCAGCGGCCCTCGAGGAAGACCAAGGAGGCAGCGGCCATATACATGGGCATCATTGGCCACAAGCTGCAGATGgccgacgacgatgatgatgatctgTCGCTGGACAGCTTCCCGGACATACCCAACGTCAAGGAGATGGAGAAGATGGAGAAGGAGATCAAAAAGAATGCGGCGGGAAAGTTGAACGTGCCCGAGGCAACGACGGTGCCAACGGCAGGTAAACAATCGCGAAAGCCGTCGCCCAAACCACCTCCAAAGggggaagcagcagcagcagctccaacATCCGCTGCGACAGTAGTGCCCCGAGCAGAACCGCCCTCCCCACCCGAGTCGGAGGAGGAAAAGCCACCGCCTCCGGCAAGACGTGGACGACCCCCAAAGCAGGGAaaggcagctgctgctgctgcggcacCTCCCGCCAAACCTCCCATCGAGGGTATGCTCGTGAAGAAGGGCTCACTGACAAAGATGAGCGAACAGGCAAAGCCCAAAGCCAAGTCCGAACAGTCAAAAGTCGACTCCGACGAGGAGGAAGACTTTCTAATCAACGAGGAGctgaacgaaacgaaacgcaaCCTGGAGAAGAGTTTCAGCGACTCGGATGACGAGCCACTGGCCATCAAAGTGCCGTGTGTGCCCAAAGGTGGCAGCCAGGAGAAGGATAACCCATTGTCAGTGGCCGCCAAGCTATCAGCCACCACAACCCACCGACCATCAGCAAAGCTCCAGTCTGCTGTCGTTCCATCCGTCACCACAGCGACGACTTCTGCGCCGGTTCTACCATCAGTGGTCGTCCAATCGatgcagctgcagctccagGCGCCCAACAGTGCGCCCTTGATCACACAGCAGTTGTCGATGCTGCCGCTGACCACCAAGCCAACGACAACGCAAGcggcaacgacaacgacacCGCCATTGGTAACGCCAGTGGCAACGCCAGTGGTAACGCCAGTGGCAACGCCAGTAGCAACGCCAGTTGCAACGCCTGTTGCAACGTCAACGCCAACGTTGACAGCACTGCCCCTGCCCAGTGGCATCCAGGTGACCGCAGCATCCAATTGCATCTCCATTCCTCCGCTGAACTATACCCCGCTAAAGACCATGGAGAAGAAGTCGCCGGTGCCGACATCAAAGATTCTTAACGTACCCGCCACTTATGCCCTGCCCGGAGGCAGTGCGGCCGCCGCTGTAGCAGTGGGATTCCAAAAGACAACGTCGTATCTGCCGCAGGCATCGCCGCATTACCATTCCGGTTATGTGCGTCCCCCACCGACGCCATCGCATCCGTTTGGCTCTGGGGGAAacggaggagcaggaggaggtggaggaggacCTTCTGGCAGCAAGACTCCTGCCCAGGGATCGCCAATGAAATACCAGACACCGCCAACGACCTATCCACCACCCATTGAGGCTTATCAGTGCCCCAAGATTAATCCAAACTTTCTCACGCCTAAATATGAGCGGGGTCCACTGCCACCACGATCCTCGGCTTCGGGCAACTTTCCCACACCCTCACCGGTGAAGATTTTGCCAACTCCAACGTCCACGACGGTGGGCACGGGTACAGGCACAGGAACAGGCACGACTACCGCCCCCTCGTCTGCCATCAAAAGCCCCCTGGCACCTCCAACGACACCTGCCACGCCGCCAGTCGTTGCATccaccagccagccagcagtaGTGTTACAGACGTCCAGCCTCAGTTTGAGCACAGCAACAGTGGCGACGCCCAGCTCGGCACCGGCACCGCCATCGGCGCCGCCTTCGGCACCACCGGTGGCCTCTACGTCTGCGGCAGCTGCACAGCAGCAAGCCAGttcagcagcaggaggagccgTTCCAACGTCAACGCCAACGCCACCGCCTGCCCACAGTAACAGCAATGCAGGGGCCGCAGTGGCTGCCGGCAGTGGCGATCCATTGAAGGACGAGATTGGCAGCATACTGGCGCAGGCCACTCTGATGCCCAGCAAGGAGGAGTCTGGGAAGATTTTTGGGATAGCCAGCGTTAGCCTGGCCCAGAGTTCCGGCCCAGACAACACCAAGTGCACGCTGGGCAAATGCGGATCGATCCACAAGCCTGTTCTGGGGCCAGTGGTGCCCACCGAGGGATATTTTGGGGACCAGCTGACCAGCAAGGAGCGGCGGAAGGCCAAGGTGAATATGACGCACGAGCAGATACAGAAGTGGCTGATGGAGTGCTCCTCCAATCCGGATGAGATACTCCAGGACGATCTGGACGATGATTTTGATGACAATATGCGGGTACAGCAGCCCACCACGCCGCCACCTACGCGGGACGAGAAAGAGCTGAGCGCCAGCTTCTCATCTTCGTCGAAGAACACCCGGGGGGGAGATCTCGGCAAAAGCGAGAGTGCCTGGTCGGCCAAGGGGCCGTCGTTAAAGGCCACGCCCGTTGTGGTTACGGCCTCCAGTCGCAAAGAGCAGGCGCAAGTCGACTGTGATGTCCTGGACGGCGAGAAAACATCGACGCCCGTGAATCTCACACAGAAAACGGAGCAAGCGACGGATAAGACGGCGACGGACAAGACAGCAGCTGCTGAAAAGAAATCTGCGATCGAGCGAAAGCCCAAGGAAACTGTCCGAACCAGGGCCCCTCCTCAGGGGCGTAGTGCTGCTACCACTCCTTCCACTCCAACGCCCACTCCTGTCACGCCCACCAAGAGCACGCCACCAACACCGCCGCCGCcggccagcagccagcagaaAGGGAACAAGGGGAAAAAGAatgccacagcaacagcagcagcagcgtctcCGCCGCCTCCACCGGCACCCACTCCGCCCACGCCCAAGCGGACGCCAGTGTACAACCAGAAGGCGAACAAGGCGACGGCCCAACAACAGGCAGAGACGAAGCAGCCGCCAccagtggcagcagcaccGAGCGTTCCAGCGAAGCGAGGAAGCGAATCTGTCTATGCCTTCGGCAAGGAAGAAGAGACCCCTACGGGGGCCAAGCCAGGCAATCGCCGCAACCGGGTGGAGCCCGCGCCGACGCCACCgccagcggcagcagcaccagtGCCGAATGCATTGAGTGAGCGGTCGCCGACCAAAAAGCGAGCGGCAGCCGCTGCAGCGGCCACTGCCGTCCAACTGACCCTCAGTCCCACCGAAAATTGCAAGATTGAGGGATCGAAACCCAAGACGGGACCGGGaagggcagcaaagaagcaacagcagcaggtgGCTCCGCCTCCGCCAACCTCAGCAGTGGAGCCGAGTGGTGACTCGGATCCCGAGGGAGCCACTTTCTACATACCCCTGCAGGGAGCGGGTGTCGGTGGCAGTGGCGACGGCGGCATCCAGGGAGTGGCCGTCAAGCTGGGACGCGAGGGCCCTGATGGACCCAACCAGAAGGTGGTGATGCAGGCCACGCTCGTGACCAAGGCCCAGATGGACACCAATTCGAAGCCGCTGCCCGAATCCCTGAACACGAATGAGCTCGTGAAGACGCTCTTCCATGCGGCATCCAACAATGATGCCGCCTCCACAACCAGTCTGAAGAGCCTGCCAAAGGCCAGCACCTCAGCTGCAGCTGGAGGAGGAGTCGCAGGCGCAGGTGCAGGCGTAGGTGCAGGCgcaggtgcaggtgcaggcGCTGGCGGTGCCTCGTCGAGTCTGGTGCGTGTCAATTCCAATTCGTCGCTCTTCTCAGGCTCCGCCAAGTCGCGGACAGCGGCTCAGACCAGCTCAACAGCTGCGGCCGTGGCCAAAAAGTACAAGGATGACACGCCAATCAAGATGGCCAATAATACGGCCTTCCCCCGGCATGACGATCCCACCCAAATGGTGGAGGCACCCATATTCCGTCCGACGGAAAAGGAGTTTGCCGATCCCATCGAGTTCATTGAGCGAATCACACCGATTGCGGCCAGGTTTGGCATCTGTAAGATCATTCCACCAGCTAGCTTCAAGCCAGAGTGTCGGATATCGGATGAGATGCGGTTTACGGCGTACAATCAGTACGTGCACAAGATGCTGCACCGGTGGGGGCCCAGTGCCAAGGAGTTGAGTGCCATCAAAAAGTACCTGGCCACCCAGAGCATCACGATGAATCATCCGCCCTGGATTGGGGGCATGGAGGTGGATCTGCCGCGGCTCTATCACACCGTCCAGGAACTGGGCGGCCTCAAGGAGGTCATCGAAAAGAAGAAGTGGTCGCGTGTGGCCGAGGAAATGTGCATACCGAAGCTGGCCCAGGACCGGGTGACCAAGCTGGATGACATCTACTGCAAGTACCTGTTGCCCTACGATACCCTGTCGCCGGCCGAGCGCCAGAAGCTCTTCGACGAGGTCGAGGCGGACTGGGCCAAGCGGGAGGCCAGAGCCAGACGGAATGCGGATCGGTTCGTCAACACGGAGAGCGTCTCGAACGAGGAGGATGACCTGAGCAGCGATGAGGATGAGGAGTCGGAGGAGGAGATCGATGGCGTGTCCATGGAGTGCATTGTCAAGGGCAGGAGCATGCCCCTCAGTCAGTTCTATCGCATCGCGAGAAACACGATGGCCCTGTGGTTCAAGAGCACCGATCCCACCGTCAACGAGGTGGAGGCCGAATTCTGGCGCCATGTCGCCGTCCGTGACAGTCATGTGTGTGTCCATTCGGGATCTATCGACAGCTCTGGCTGGGGCTATGGCTTCCCCAGTCCCGGTCCAAAGGGCAAGGGCTCAAACTATGCACGCCATCCGTGGAACCTTAAGGTTCTCACCAACAATGCTGGTTCGGTGCTGCGATCGTTGGGGCCCGTGATGGGCGTGACAGTGCCCACCCTCCACGTGGGCATGCTCTTTTCGGCGTGCTGCTGGTACCGGGATCCCCATGGTCTTTCCTGGATTGAATACCTCCACACGGGTGCCTCCAAACTGTGGTACGGCATACCCGACGATCAGAGCGCCAACTTCAGATCCGCCCTCACCTCGCTGATCCCGACCCACTGCCAGAACAAGACCATTTGGCTGCCCTGCGATACGGTGATGGTGCCCCCGCACATGCTCACAGATCGGGGTGTGTCTCTGTGCCGTATCGAGCAGAAGCCGGGCGAGTTTATTGTGGTCTTTCCCCGGGCCTACACCTCCAGTCTGGCCACCGGCTATGTGGTCTCCGAGAGTGTCTATTTCGCCACTATGTCGTGGCTGGATTTGGCCAAAGATGATTTCAGGGACATCCATGAGAGCTGCGAGCCAGCCATGTTTTCGCTGGAACAGCTACTGTTCGCCCTGGGCTATGACCAGCGCGTCAACCCCGATACCCTCCATCAAATGCTGCCCATGCTGAACGAGGTCTGTGAGAAGGAGTCTGCAGCGCGAGAGCAGCTTAGAGCTGCTGGCGTGACATCCACCGAAAAAGTGCAGGCAGAAAAGGGCCAAAAGGCcaagaagcagcaacagccgccGCACAAGTCCATCGAAAGTGAATGCGATCTCTGTCGTGCCAATCTGTACATATCCATGGTGCGCACCGACGACGGCAACGTCTACTGTCTGCAGCATGCCCTAAAGAACCTCAACAATGGCAACATCCAGGCGAAGCAATGCAAGCTGATTTACGCATACAACGTGGACGACATACAGCAGTTAATACGCCAGCTGCAGGAGAAGATAACCCACAAGGCGGCCGTAAAGAAAAAGTAG
Protein Sequence
MVVSKDNKRRRKETDTPPPAAAAASAASAAAAAAAVESSPEMPKRTKVQAQRKFAQGQSAPSSSSSGMAYSSVVAAASGAGAGGTGPSTSGAESSQPPIEILPNKCPKPQDFLTFLCFRGTPALPAHLDYLNQGKSKDSKESEPTLPGNNNNNNNSSTKKAQNSRAVNNKKKRGRPAKGGAAATKKRDAEVEPEPPAGADKSSTAVAAAASADKAASDKPNLIPAAGAPTTATTSLLPGAVRKRAEVVTDGNRRGGRGRAAPESTGNTNSHSLGAATSSSTAADTNKRRSNRSSTKESKAIIDDLAEEEHEDEEDDDEYFSAHDATSRNGDEASKEGPAKAEPAKRGRTAAAAAAAAKKPSSEPPSVTVAEVAIKEKGPAKRLRQRESPIFIPSPESSGRMTRQRAFFEPVKVPPQQEEPEKAKEDSKKKKDKDPEVAKEPKGAQSQPEPEQEPAKQLKETKEKTNSSIYAKEAKQQQQKQQQQQLENGDSQHGAGSKGKKSLNVFDFSSDDEQPLAKSIKLKKGAKGPSPKKGNAAAAPPPARSRKAATKKQDKEKEKEEEKEKEVAVAATVAATSEPNKRGAAKAGKKKAEDPPADEQDLAPPCPKKATTNARPGRKTAKSKATAEEAAAVEVEPQPQRSQRPSRKTKEAAAIYMGIIGHKLQMADDDDDDLSLDSFPDIPNVKEMEKMEKEIKKNAAGKLNVPEATTVPTAGKQSRKPSPKPPPKGEAAAAAPTSAATVVPRAEPPSPPESEEEKPPPPARRGRPPKQGKAAAAAAAPPAKPPIEGMLVKKGSLTKMSEQAKPKAKSEQSKVDSDEEEDFLINEELNETKRNLEKSFSDSDDEPLAIKVPCVPKGGSQEKDNPLSVAAKLSATTTHRPSAKLQSAVVPSVTTATTSAPVLPSVVVQSMQLQLQAPNSAPLITQQLSMLPLTTKPTTTQAATTTTPPLVTPVATPVVTPVATPVATPVATPVATSTPTLTALPLPSGIQVTAASNCISIPPLNYTPLKTMEKKSPVPTSKILNVPATYALPGGSAAAAVAVGFQKTTSYLPQASPHYHSGYVRPPPTPSHPFGSGGNGGAGGGGGGPSGSKTPAQGSPMKYQTPPTTYPPPIEAYQCPKINPNFLTPKYERGPLPPRSSASGNFPTPSPVKILPTPTSTTVGTGTGTGTGTTTAPSSAIKSPLAPPTTPATPPVVASTSQPAVVLQTSSLSLSTATVATPSSAPAPPSAPPSAPPVASTSAAAAQQQASSAAGGAVPTSTPTPPPAHSNSNAGAAVAAGSGDPLKDEIGSILAQATLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEGYFGDQLTSKERRKAKVNMTHEQIQKWLMECSSNPDEILQDDLDDDFDDNMRVQQPTTPPPTRDEKELSASFSSSSKNTRGGDLGKSESAWSAKGPSLKATPVVVTASSRKEQAQVDCDVLDGEKTSTPVNLTQKTEQATDKTATDKTAAAEKKSAIERKPKETVRTRAPPQGRSAATTPSTPTPTPVTPTKSTPPTPPPPASSQQKGNKGKKNATATAAAASPPPPPAPTPPTPKRTPVYNQKANKATAQQQAETKQPPPVAAAPSVPAKRGSESVYAFGKEEETPTGAKPGNRRNRVEPAPTPPPAAAAPVPNALSERSPTKKRAAAAAAATAVQLTLSPTENCKIEGSKPKTGPGRAAKKQQQQVAPPPPTSAVEPSGDSDPEGATFYIPLQGAGVGGSGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQMDTNSKPLPESLNTNELVKTLFHAASNNDAASTTSLKSLPKASTSAAAGGGVAGAGAGVGAGAGAGAGAGGASSSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAVAKKYKDDTPIKMANNTAFPRHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSITMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWSRVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDLSSDEDEESEEEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNAGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRSALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNPDTLHQMLPMLNEVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPHKSIESECDLCRANLYISMVRTDDGNVYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQQLIRQLQEKITHKAAVKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
-