Daur001708.1
Basic Information
- Insect
- Drosophila auraria
- Gene Symbol
- -
- Assembly
- GCA_008042615.1
- Location
- VNJW01003304.1:5866-8884[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.067 6.7 7.6 0.0 1 19 400 418 400 421 0.80 2 8 2.8e-05 0.0028 18.3 0.6 1 23 735 758 735 758 0.97 3 8 4.3e-05 0.0043 17.7 1.4 2 23 796 817 796 817 0.97 4 8 1.7e-05 0.0017 19.0 1.9 1 23 823 845 823 845 0.96 5 8 3.2e-05 0.0032 18.1 0.9 1 23 851 873 851 873 0.98 6 8 0.00054 0.054 14.2 1.5 1 23 879 901 879 901 0.97 7 8 0.0095 0.95 10.3 0.0 2 23 908 929 907 929 0.96 8 8 4.1e-05 0.0041 17.7 0.3 1 22 935 956 935 956 0.95
Sequence Information
- Coding Sequence
- ATGCGTCAGCTCTGCGGCAGCGTTTACACCTGGAACTGTGCCGGCGAGCTCTATGCCATCGAGTGCTCCCTGTGCGAGGAGCGGCCACTATGCGCCCTCTCCGAGTTCCCAGAGCACATGGACGTGTGGCACTCCGACTGGCAGGAAGCGGAGGCAGTTACCTCCTCGGATGGAGCCAACGAGGCCGCAGCGGCAGCCACGCCCGAGGATGAGCTCATGCAGGAGGTGCTGGCCGAGCAGCGGACCAGCGGAGAGGACAATGAACTCAAGCAGCTGCTGGTGTGGCAGCTGAATGCcatcgaggaggagctgctgccagGCGCGGAGGTCGAAGAAGCCGGCGGAGAATTGGTTGGGGAAGTTGTGGAGGAAATGAACGAGGCCGCCGAGGAACCGGAGGAGGGAGTGGGAGTGATGGATGTGGAGGAAGCTCCGGGAAAGCCTAgagaagcagcagaagaaaCGGGAGAATCCATAGTGTCTTCATCGGTGACCATTCCCCTGCCAACTGCAAGCCTTCAGGACGCCTCGCCAGTTCCCGAGGGCCAGCGCCTGACCACCCAGCACATCCATCGCCTGATCGATCTGTACCGCTCGGAGCCGCGCCTCTGGAACCAGTCGCATCCCCAGTTCCACAACATGGGCCTCTGCCGCCAGTCCTGGGCTCGCATCACGGAGGCCTGGAGCGCCTACTGCGGACGCAGCTTCAACGTGACGGACGTCCGGATTCGCGTCTCCACTCTGTGTCAGCGCTTCCTCAAGCAGCGGGAGCGCCTGGAGGCGGACGGCGAGCTGGATGATGCGGCCAAGTTCGTGCACTTCGACCAGCTGAGCTTCCTGTGCGAGCAGCAGTCGCTGCTCAAGCGGCAGCGTCACTATGCCCACGAGAACCGGCGGCTGCTGGAGCTGTACGAGCACTATCCGATCCTCTGGCACAATGCCCACAAGCGACTCCGGTGCCCGGAAACGGTGCGCCTGCGCCATGAGGCCCATTTAGGGCTCCAGTTGGCCCTGCGTCTCTCGGGGATTAGCCTGTCGCCGGTGGTGATCCAGCGACGCCTGCAGTCGCTGCGCAAGCGGTATCGCCTGGAGAAGATCAGCTACCTGCACAGCGTGGTCGAGGGCAAGCAGGCGGAGTTCGTCTCGGGCTTCGAGCACTACGCGGAGATGGAGTTCCTGCACAAGCACATCGATCCCTATGTGTGCGCCGTGTGCGGCAAGATCTTTGAGAACCTGGCGGGTCACCAGGCGCATGTCCAGAGCAGTTGCGAGGAGCAGCTAGCAGAGACGCCAGACGAGGAGAAGGTCGTGGTAACGTCCCAGGAAAAAGAGGAAGTCCCACGTAAGCCAGAGGAAGAACCCCATGTTAGGGAGCCCGAGCCTCCCGGGGATCTGCCCAGCTTGGCCGAGGCCTGCGCTGCTGCCCAGCTGGAAGATCCCTGCGAGCTGGAGCTCGATCTCCATCCCAGCGAGGACACCACGATCGAGGGCGAGTCCCCGGGCGGCAGTCCGCGTCTGCGCCTGAGCCTCCAACACACCCGGGACCTGATCGAGCTGTACCGCAGCCACGTCTGCCTGTGGGATCCCAATCACCTGGACTACCACGCCCGCAAGCAGCGTCGCCAGGCCTGGCAGGCCATCACCAAGGAGCTGAACGCCAGGGCGGGCCAGAGGCTCAGCTGGCAGATGCTGCACCGCAAGATCACGGACTACACCAAGTACTATCGCAAGGAGAAGCAGCGGCGCATGGAGGAGCAGCAACCTtcagaggagcagcagcagcagcagcagcagcagcagcaggatcagAGCAGCAAGTGGTGCCTCTACCAGCAGTTCGCCTTCCTCGACGACGTCCTGCCCGTGAGCAGCGAGATGCAGAAGAGCCTGAACCAGCGGGACAGCAACCTGAAGATCATATCCGTCTACCAGAGCTATCCGCAGCTCTGGTGCACCGATCATCCGGACTACACCAAGCGCCGCCAGCGGCAAAGGCAGCTTGAGTCCCTGTGCACGCGCCTGCAGGAGGTGAGCAACCTGCAGGTCACGGTGGAGCGGCTGAAGAGTCGCCTGATCGAGTTCCGGTGCCAGTATCGCCACTGCAAGGAGGCCCGCATGGAGGCGCTCAAGAAATCAGAGCCCTGGACGCCCAGCTACGAGTACTACGAGCCCTTGCGCTTCCTCGAACTCCATGTGGCCCCCTTCCAGTGTCCCAGATGCCCAGCCTCCTTCAAGCGCCGCTCGGACTACTTGCAGCACGAGAGGAACGTGCATGCCGAGGTGGAGAAGTCCCTGGACGGCGAGTTCCGCTATGTGAGGCGGCGCAAGGGCAAGCGGtccaaggaggagcaggagtcGCATCAGCAGGCCCTCGACCTGGCCAACGTCTGCCACATTTGCGGCCTCAAGTTCTCCCTGCGCACCAGCCTCCTCGCCCACCTGCGACGCCATCTCGGCCAGCGCAGCCACGCCTGCAGCGAGTGTCCCAAGAAGTTCTTCAGCTCGACAGCCCTGCGGGTGCACCAGCGGAGTCACACCAAGGAGCTGCCCTACGTGTGCGAGCACTGTGCCCGCGGCTTCGTCAATGCCAGCAAGCTGAACCAGCACGTCAAGCGACACCGGAACCAGCGCGACTTTCCCTGCAATCGCTGCGACAAGGCCTTCTACACGGCCCACGAGCGGGATCGCCATCTAAGGGCCCACCTCAACATCCGGGACAAGGTGTGCCCCTACTGCTCGCGGGCCTTTGTCGTGGGCAGCGCCTACTACGCCCACCTCAATCTCCATCGCAGCGAGAAGCGCTACGCCTGCACGGGCTGCGGCAAGCGGTTCGCCCAGTACGCCGGCCTCTACAAGCACCGGCGGCGGTGTCTGCCCGCCGAGGTTATCGAGGAGTGA
- Protein Sequence
- MRQLCGSVYTWNCAGELYAIECSLCEERPLCALSEFPEHMDVWHSDWQEAEAVTSSDGANEAAAAATPEDELMQEVLAEQRTSGEDNELKQLLVWQLNAIEEELLPGAEVEEAGGELVGEVVEEMNEAAEEPEEGVGVMDVEEAPGKPREAAEETGESIVSSSVTIPLPTASLQDASPVPEGQRLTTQHIHRLIDLYRSEPRLWNQSHPQFHNMGLCRQSWARITEAWSAYCGRSFNVTDVRIRVSTLCQRFLKQRERLEADGELDDAAKFVHFDQLSFLCEQQSLLKRQRHYAHENRRLLELYEHYPILWHNAHKRLRCPETVRLRHEAHLGLQLALRLSGISLSPVVIQRRLQSLRKRYRLEKISYLHSVVEGKQAEFVSGFEHYAEMEFLHKHIDPYVCAVCGKIFENLAGHQAHVQSSCEEQLAETPDEEKVVVTSQEKEEVPRKPEEEPHVREPEPPGDLPSLAEACAAAQLEDPCELELDLHPSEDTTIEGESPGGSPRLRLSLQHTRDLIELYRSHVCLWDPNHLDYHARKQRRQAWQAITKELNARAGQRLSWQMLHRKITDYTKYYRKEKQRRMEEQQPSEEQQQQQQQQQQDQSSKWCLYQQFAFLDDVLPVSSEMQKSLNQRDSNLKIISVYQSYPQLWCTDHPDYTKRRQRQRQLESLCTRLQEVSNLQVTVERLKSRLIEFRCQYRHCKEARMEALKKSEPWTPSYEYYEPLRFLELHVAPFQCPRCPASFKRRSDYLQHERNVHAEVEKSLDGEFRYVRRRKGKRSKEEQESHQQALDLANVCHICGLKFSLRTSLLAHLRRHLGQRSHACSECPKKFFSSTALRVHQRSHTKELPYVCEHCARGFVNASKLNQHVKRHRNQRDFPCNRCDKAFYTAHERDRHLRAHLNIRDKVCPYCSRAFVVGSAYYAHLNLHRSEKRYACTGCGKRFAQYAGLYKHRRRCLPAEVIEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00488858;
- 90% Identity
- iTF_00609358;
- 80% Identity
- -