Daur008586.1
Basic Information
- Insect
- Drosophila auraria
- Gene Symbol
- -
- Assembly
- GCA_008042615.1
- Location
- VNJW01014135.1:1-7957[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.4e-12 2e-08 34.1 0.0 1 40 509 549 509 552 0.90 2 4 4.1e-14 1.1e-10 41.3 0.1 2 39 564 601 563 604 0.94 3 4 9.6e-18 2.5e-14 52.9 0.0 1 45 618 663 618 663 0.98 4 4 9.7e-20 2.6e-16 59.3 0.0 1 43 670 713 670 714 0.97
Sequence Information
- Coding Sequence
- GGCCTCTTGCGCACCGCCGAACAATTAAAGATCAAGGGCCTCTGCGAGACCGCCGAGAATGCGGATGACTTGAACGACGCGGCCACAGCAACGATCACAGTTTCGGAGAACATTCAGCAGGCGGTTGTTGCACACCACCATCCCCACCAGACCATTCTCATCCAGGGCCAGAATCCCACCTCGATTGTTAGCCTGCAGCAGACGGCCGACGGCAACTATATACCGGTCGGAGCAGGAACTGGCGACGAATCGGACACCGAGAACGATCACGATCACGAGCACGAACACGAGCATATCCACGggcacggacacggacacggacacgggcATCCGCACGGACACGgccacagtcacagtcacgaTCACGACCACGACCACGATCACGATCACGAGCTCGAGAATAAACCGAATAAGATCTGCAAGACGGAACAGTCGGTGGCATCGCCGGCGTCCAATTCATCGAGCGCCAACTCAAACAATGCAGCGGGCGTGAGCGGCGTGTCCACCACCGGCAACCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACggaaaagatacaaaaaatatgactAGTTTAGGCATGGGCATGAACGGCGGCCTGTTGGGCGTGCCCATGGGATTCCTGGACTTTACACCCGAGCCACCAGCACCATCCGCCACCCCAGTCACCGTTACGGAGCACGTCGATCTGTCCTGCAACCCCAGCACGGACACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCCCAGCAAATCCATCGGCTCGATCAGTCCCCCATGCACTCGATATCCCATCACCATACCGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAGAGCGAGGTGATCGAGGCCAAGCACCTGGCAGCTGCTGCCCAGCAGCATGCCCTTAAccaggcccagcagcagcagcagcatgccCATCACcaagcccagcagcagcaccagcaacagcagcaccagcagcagcagcaacagcagcaacagcaacagcagcagcaacagcagcatctgCATGCCCAGCAGTTGCAGgcgcagttgcagcagcaacagcagcagcagcaacaccaccagcagcagcaacagcaggcggcagccgctgcagccgcagcagctgctggtgtGCATGGCCAGCATGGGGGACACGTGACGCACGCCGATATTGGCGGTGCCACAGTCATGGAGATCGATCCGAGCCAAATTAAACACGAGCCGGGCATGATAATAACGCCAGAGATTGTCAACATGATGTCCTCAGGGCATATGGACATGTACAATTCGGACACGAGCGAGGATTCAATGATGATCGCCAACGGCTCGCCGCACGATCAGAAGGAGCCGCACTATACGAATTTGGACCAGCAGCACGGTCTGGGCGGCGGCAGCGTTTGTGGCCCGGGTGGGCcaggtggtgctggtggtggtgggggCATGAGTGGTGgggctggctctggctctggcgaGAAAGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCGTCCGCCATTTATGGCATCCCATCGACCACCCTGTGGCAACGTGCTCATCGTTTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCATGGAACGAGGATGCTCTGCAGAATGCCTTGGAGGCGTTACGTTCGGGTCAGATATCCGCGAACAAAGCGTCCAAGGCCTTTGGCATACCCTCGTCGACGCTCTACAAGATTGCCCGGCGGGAGGGCATCCGCCTAGCGGCACCGTTCAATGCCGCCCCAACCACGTGGACGCCCGAGGATCTGGAGCGTGCCTTGGAGGCGATACGGGCGGGTAATACATCGGTGCAGAAAGCAAGCGCCGAGTTTGGCATACCAACAGgaacactTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCGACGCCTTGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCTGTGCGCGTCGGCCAAATGTCCATCAACCAGGCGGCCATTCACTATAACCTGCCCTACAGCTCGCTCTATGGCCGCTTCAAGCGTGGCAAATACGATGTCGTGGCCAATACGAGTGGCGTGGCGCTGCTCAACACCTCGGGCAATACCACCGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAATTCGTTGCACATGTTGCAGCAACAGTTCCCGTACAGTCCGTCGCCGCATCCCCCAACGCCGCAGCATCACAGCACGCCGCAGCATCATAGCTCGGGGCAGGGGCCCCCCACGCCGCAGCacatgcagcagcaacagcacgtGGTGCATATGCAACAGCAGTCGCCCCATCCGGGTCACCATCCGCAGCACATGCAGCAGGATGTGGTTACGTCGAGCAGCCAGGTGGTGCacagccaacagcagcagcagcagcagcaacagcagcttcAGCAGATCTATCAGCACCACGGGACGCCGGAGCGTAGTTGA
- Protein Sequence
- GLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVAHHHPHQTILIQGQNPTSIVSLQQTADGNYIPVGAGTGDESDTENDHDHEHEHEHIHGHGHGHGHGHPHGHGHSHSHDHDHDHDHDHELENKPNKICKTEQSVASPASNSSSANSNNAAGVSGVSTTGNQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSISHHHTGDESNSNLVQHIKSEVIEAKHLAAAAQQHALNQAQQQQQHAHHQAQQQHQQQQHQQQQQQQQQQQQQQQQHLHAQQLQAQLQQQQQQQQHHQQQQQQAAAAAAAAAAGVHGQHGGHVTHADIGGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGLGGGSVCGPGGPGGAGGGGGMSGGAGSGSGEKGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVALLNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSGQGPPTPQHMQQQQHVVHMQQQSPHPGHHPQHMQQDVVTSSSQVVHSQQQQQQQQQQLQQIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -