Basic Information

Insect: Drosophila atroscutellata
Gene Symbol: pita
Assembly: GCA_035041605.1
Location: JAWNLA010000095.1:3313761-3316010[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00091 0.058 13.8 0.1 1 23 248 270 248 270 0.95

2 9 2.4e-05 0.0015 18.8 2.2 1 23 276 298 276 298 0.98

3 9 4.3e-07 2.8e-05 24.3 2.6 1 23 304 326 304 326 0.99

4 9 0.00048 0.031 14.7 0.2 1 23 332 354 332 354 0.96

5 9 0.0002 0.013 15.9 0.1 1 23 360 382 360 382 0.95

6 9 7.9e-05 0.0051 17.1 0.2 1 23 388 410 388 410 0.93

7 9 0.006 0.38 11.2 5.3 1 23 416 438 416 438 0.98

8 9 0.014 0.89 10.1 0.1 3 23 475 495 473 495 0.96

9 9 0.016 1 9.9 0.5 1 23 501 524 501 524 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00091	0.058	13.8	0.1	1	23	248	270	248	270	0.95
2	9	2.4e-05	0.0015	18.8	2.2	1	23	276	298	276	298	0.98
3	9	4.3e-07	2.8e-05	24.3	2.6	1	23	304	326	304	326	0.99
4	9	0.00048	0.031	14.7	0.2	1	23	332	354	332	354	0.96
5	9	0.0002	0.013	15.9	0.1	1	23	360	382	360	382	0.95
6	9	7.9e-05	0.0051	17.1	0.2	1	23	388	410	388	410	0.93
7	9	0.006	0.38	11.2	5.3	1	23	416	438	416	438	0.98
8	9	0.014	0.89	10.1	0.1	3	23	475	495	473	495	0.96
9	9	0.016	1	9.9	0.5	1	23	501	524	501	524	0.91

Sequence Information

Coding Sequence: ATGAATGCATTTGGCGTGCAATGCAATGATGGACTGCccagttttatttgtttggatTGTCGGCTGCTCTTCGAGCACTGCTACCGCTTCAAGCAGATGTGCAAGAATGCGGAGACGTTGCTACGTCAATATCCGCTCACCGGCAAATGGCCAGAACCATTGGAAAAGCCTCGTGCCCCGTTGGTctccaaacaaaaacaaatagctGTCAACAAGGAGCCTGAGACACAGCCAAAGAAACTGCTCAACTCGTTGGCCAAGAGCAACAATGTGGAGATCGAAAGTGTGCAGGTGCTGGAAACTAACCTTCTCACCAAGAAGCTACTTAATTCGGCAGCAGTGAGCACGGCCGAGCCACCAATTCCGCCACGAGGATCACCCCAAAAGCGACCACAGTCAAAGTCATCGTATCAGATTAAGGTGGAGAACAATGAAGAGCTGTCCATGGATGATGTGCACAACCTGTTAGCGGACATTTCTGGCGAACTGGAAGAAACGACGGATATCTCAACGGCGCCGTCAACGTTGATGTCGCCAGGCAAACCCAAGGTTCTTAACAAATCCTCGATGCGATTACTCAACAAGGGTACCACTACCACCGTGGAGCCACGCTTGGCCAAGCCCCAGATCAAGCACTACGAGGATGGCAATGTGGCGCTCGTCACTGAAATACTCCAACCCGGTGACCTCGAAGTGTCGGCGgatccaattaaaaatgctgcaCCGGTTGCCACCAATGTCTTCTCGTGTCCAGATTGCGATCGCTCTTTTCCATTGATGCAGTTGCTCGACATACACATGGTGAACCACACACGAACGCGCAGTTTTCAGTGCCAAAATTGCGAGAAAGCCTTCTTCTCCAAGTACGATCTGCAGAAGCACAATATTACCCACACCGGAGAGCGTCCGTACAAGTGCAGCATCTGTGAGAAGACGTTCACGCGCCAGGCGCTGCTACATCGGCACGAGCGTATCCACACGGATGTCCCCAAATTCATTTGCCTGTACTGCGAGAAGCCGTTCATTTCGCGCGAAGAGATGGAGAAGCATGCGGAGCGCCACACCAAAAAGAGGCCCTTCCAATGCGGCGTCTGCCAAAAGGCGTTTGCCTTCAAGCAGGGTCTGGAGCGGCACGAGgttatCCACAGCACTAATCTGCCGTTTTCGTGCCAGTACTGCAGTCGCAGCTTTGTGACCGCTGGCAAATTGGCACGCCATGTGGTTGCCCATGCTGGGAAGCGTGTCTATCCATGCAAATACTGTTCCAAGTCGTATCTGTTGTCGCATCATCTTTCGCGGCATGTGCGCATGCACAAACAGGCAGCGGCTGCTTCGTTCACCTGCAGCATCTGCAAGGATACGCATCAATCTTATGACAGCCTGGTGGATCACTCGTCGATACACGCGAGTGTCTCGATGATCTGTCCGCTGTGCAAGGCGTCCATTGCGGACGCGGACTGCCTGGAGACGCACATGCAGGCGCACAAGGAGTGCGAGCGACATGCCTGTGAGTTTTGTGATTTCATCTTCCTGAACTCCGCCCAATTGCAGAAGCACATCGAAGATGATCATGTGGTCGATATGGTGCCGTATCAGAATGAAAGCGAATCCGAGCAGGGCATCAACAAAGAAGAGGAGGTCGAGGAGGAGTCTGAATTGATGGCGGAATTGTTGGCCGAAATGTCGCCATCGCCGTCACCGTCGATAACCCCAACAAAAATACGCAAACTGAATCCGATTGCAAAGACTCGTCAGACACCAGATGAGAAAACCAAACGAGAGTCCAGATCCCAGACAATCAAACCGAAGCAAGAGATTTCGCCAGATAATCGGAAAAGATCCCGAAGCGTCCACAAGTCCCCTGTTGCCTCGTCCGTTTCACCCGAAAGCAAGCGTCCCTCGCGTCGGCACGATAGCAAGGAGAGATCCTTGAAGACCAACGATACTGCAAGAAGACATACTAAGAAAATTGTTGTGGAGCAGAGTAGGCAGCCCAGCAAACATCGCAATTTAAAAGTTTCCAGCTCCAAGTCAAAAAGCCCCAagtaa
Protein Sequence: MNAFGVQCNDGLPSFICLDCRLLFEHCYRFKQMCKNAETLLRQYPLTGKWPEPLEKPRAPLVSKQKQIAVNKEPETQPKKLLNSLAKSNNVEIESVQVLETNLLTKKLLNSAAVSTAEPPIPPRGSPQKRPQSKSSYQIKVENNEELSMDDVHNLLADISGELEETTDISTAPSTLMSPGKPKVLNKSSMRLLNKGTTTTVEPRLAKPQIKHYEDGNVALVTEILQPGDLEVSADPIKNAAPVATNVFSCPDCDRSFPLMQLLDIHMVNHTRTRSFQCQNCEKAFFSKYDLQKHNITHTGERPYKCSICEKTFTRQALLHRHERIHTDVPKFICLYCEKPFISREEMEKHAERHTKKRPFQCGVCQKAFAFKQGLERHEVIHSTNLPFSCQYCSRSFVTAGKLARHVVAHAGKRVYPCKYCSKSYLLSHHLSRHVRMHKQAAAASFTCSICKDTHQSYDSLVDHSSIHASVSMICPLCKASIADADCLETHMQAHKECERHACEFCDFIFLNSAQLQKHIEDDHVVDMVPYQNESESEQGINKEEEVEEESELMAELLAEMSPSPSPSITPTKIRKLNPIAKTRQTPDEKTKRESRSQTIKPKQEISPDNRKRSRSVHKSPVASSVSPESKRPSRRHDSKERSLKTNDTARRHTKKIVVEQSRQPSKHRNLKVSSSKSKSPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00599057;
90% Identity: iTF_00599057;
80% Identity: -