Basic Information

Insect: Drosophila atroscutellata
Gene Symbol: -
Assembly: GCA_035041605.1
Location: JAWNLA010000108.1:13762080-13768600[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.1e-07 7.2e-06 26.1 1.8 2 23 152 173 152 173 0.97

2 9 3.1e-07 2e-05 24.7 1.5 1 23 179 201 179 201 0.98

3 9 1.3e-07 8.4e-06 25.9 1.1 1 23 207 229 207 229 0.98

4 9 7.9e-07 5.1e-05 23.4 0.7 1 23 235 259 235 260 0.95

5 9 0.00012 0.0078 16.5 3.0 1 23 265 287 265 287 0.97

6 9 0.00043 0.028 14.8 3.3 1 23 293 316 293 316 0.98

7 9 0.00019 0.012 15.9 2.7 1 23 322 344 322 344 0.99

8 9 4.5e-06 0.00029 21.1 0.8 1 23 349 371 349 371 0.98

9 9 0.0061 0.39 11.2 0.3 3 23 379 402 377 402 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.1e-07	7.2e-06	26.1	1.8	2	23	152	173	152	173	0.97
2	9	3.1e-07	2e-05	24.7	1.5	1	23	179	201	179	201	0.98
3	9	1.3e-07	8.4e-06	25.9	1.1	1	23	207	229	207	229	0.98
4	9	7.9e-07	5.1e-05	23.4	0.7	1	23	235	259	235	260	0.95
5	9	0.00012	0.0078	16.5	3.0	1	23	265	287	265	287	0.97
6	9	0.00043	0.028	14.8	3.3	1	23	293	316	293	316	0.98
7	9	0.00019	0.012	15.9	2.7	1	23	322	344	322	344	0.99
8	9	4.5e-06	0.00029	21.1	0.8	1	23	349	371	349	371	0.98
9	9	0.0061	0.39	11.2	0.3	3	23	379	402	377	402	0.94

Sequence Information

Coding Sequence: ATGGACACCATTTGTAGGCTGTGCTTCCAGACAGCAACGTTATTCCAAGTGCCCGGCTATAGCATACCAACGTGCGTGCGCTGCTCGGAACAGTTGACAAACAATTCAAACTTTCATCAGGCGGTGCGTGTGCAGGACGGCgcaactgctgcttctgtggCGGCCGCTGcggtagctgctgctgctgcagcctcATCGGCAGCTTCTTCCAGTGACGGTGATGCTGTGGCGGCACAGCTGACGAATGGCAGCGCTGTCGCCGCTGTGctacagttgcaacaacagcagcagcaacaacagcagcagcaacaacaacaacagcagcaacaacaacagcagcaacaacaacaacagcagcaacaacaacaacaattgcaatcatCAAGTTCTTCCGAGAATCTACAATCGCAGGACGATTCTGAAGATGTGGATCTGATATTCAACGAGGAGGGCTCCTGCCCGCTGTGCAACAAGACGTTCTCACGCAAATCCTCGCTCATGACGCACATACGAAATCACTCGGCTGAGCGCAAATTTGTGTGCAGCTATTGCCACAAAGGCTTTACGCAGGCAGCGAATTTGCGCAATCACGAGCGCATCCACACAAATGATCGGCCGTATCAGTGCGTGGACTGTGGCAAGACATTTACCCAAATCACAAATCTGAACAATCATCGACGTCTGCATACCGGCGAGCGCCCCTTTGTCTGCAATGAGCCCGAATGCGGACGCAGTTTTGCCCAGGTGACCAATCTGAACAATCACATGAAGTCACACCACAAGGTGCAGCAGTATTGTTGCAACGTTTGCAGCAAGAAATTCACGCAGGTCACCTCACTGAATCAGCATCTGCAGGCGCATGCCGGCGTCACCGGCTACTATTGCCCTCGATGTCCGGAGAAGAACTTTAAGCTGCAATCGCAGCTGCATACGCACATGAAGACACACGGTTTGGCCTTTCCGTACGAGTGCAGCAAGTGCGATGAGAAATTTCTGCAGCAATCGCATCTCGATCAGCATCTCAAGATGCACGACGAGTTCAAATTCAAGTGCGACATCTGCCCCAGCAGCTTCAATCAGGAGTCGCTGCTCAAGAAACATGTGCAGCGCCATGTCGAGGGTCGGTATCTCAATTGCCCGGTGGCCAATTGTGCCGAATCGTTTGCCGTGCGACAACATCTCTCCAAACATTTGCTCACCAATCACTCACACCACGAGCTGCCGCCGCCGAAGCGCTCCAAAAAGACCATCACACTGCAATCGCCGCAACAGCCGCTGGCCATGATCGGCCAGCCCCTGTCCCTGCAGCATACGACGGGGCAACGGGGCAGGCCGCcgaagaacaagaacaagaccTCACTGGCAGCCACGGCCATTAAGATCGAGATCAACGAGCCGTTGCACAGTCAGCACATTATTAGCAGTGCCAGTGGCCTATCCATCCAGCAGCAGATCAATCAGcatatgcagcagcaggcacagcagcaacagcagcagcaacagcagcaacaacagcagcaacagcagcagcaacatctccATTTGCCCATGGGCCAAGCAGTTAAGGCGCGCTTCATACCCACTAaatag
Protein Sequence: MDTICRLCFQTATLFQVPGYSIPTCVRCSEQLTNNSNFHQAVRVQDGATAASVAAAAVAAAAAASSAASSSDGDAVAAQLTNGSAVAAVLQLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLQSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVCSYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCNVCSKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGLAFPYECSKCDEKFLQQSHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLNCPVANCAESFAVRQHLSKHLLTNHSHHELPPPKRSKKTITLQSPQQPLAMIGQPLSLQHTTGQRGRPPKNKNKTSLAATAIKIEINEPLHSQHIISSASGLSIQQQINQHMQQQAQQQQQQQQQQQQQQQQQQHLHLPMGQAVKARFIPTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00533229;
90% Identity: iTF_00572743;
80% Identity: iTF_00558892;