Datr013670.1
Basic Information
- Insect
- Drosophila atripex
- Gene Symbol
- -
- Assembly
- GCA_035045925.1
- Location
- JAWNOP010000070.1:958788-961228[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 1.7 9.3 0.5 2 23 34 55 33 55 0.96 2 13 0.0063 0.48 11.0 1.0 1 23 61 84 61 84 0.93 3 13 0.041 3.1 8.4 0.9 1 19 96 114 96 117 0.93 4 13 0.045 3.5 8.3 1.4 3 22 134 153 132 153 0.90 5 13 0.3 23 5.7 2.0 2 23 402 424 401 424 0.94 6 13 0.012 0.95 10.1 0.3 1 23 449 471 449 471 0.97 7 13 0.0049 0.38 11.3 1.6 1 23 479 503 479 503 0.95 8 13 0.11 8.5 7.1 2.4 2 23 508 530 507 530 0.95 9 13 0.00028 0.021 15.3 0.2 2 21 543 562 542 563 0.93 10 13 0.0083 0.64 10.6 0.4 3 23 573 593 571 593 0.97 11 13 8.4e-07 6.5e-05 23.2 2.8 1 23 599 622 599 622 0.98 12 13 3.4e-05 0.0026 18.1 1.4 1 23 628 650 628 650 0.98 13 13 0.00031 0.024 15.1 2.9 1 23 656 678 656 678 0.95
Sequence Information
- Coding Sequence
- ATGgcccccagcagcagcagcggcgccgccgccgccgcagcagccgcTGCTGCCACCAAGCTTCTGGTGGAGATCTCCACGGACGGAGTACCCAAGTTGCACTGCCCGGTGTGCAACAAGGCCCTTTTCTCGCTTGCCGGCTATGTGAAGCACGTGAAGAAGCACCAGCCGCCTGGCGGCTTTGAATGTCGGCAGTGCGACGCTCGCTATTGCAGCGAAGAGGAACTGACCCAGCATGCTAAGGATGAGCATCCAGATAGTGGCTCAGCCCCGGAGGACAAGCCATATGTGTGTGACAAGTGCGGCGTGGAGTACATGTACCAGGAAGCCTATCGCCGCCACTGCCGTACCAAGTGTGGCGAAGAGAAGCTCTCCAGGGAGGAGTCGCGACCTGTGGAATGCCAGTGCTGTTCCACTCGCTTTTCCACCGATGCCAACCTGGAAAAGCACCGACGCAGTCGTCCTGACACTTGCGGGCAGCCGGAGTACGATCCGCCTGGCAGCTCGAATCAGGACATGAAGCGGAAGAATCGCAAGAAGATGAAACGAGCTGACTCGGACGAGGAAACCACCTCTGACGAATCCGAGGTAGACAGCGACGATGACATTCCCCTGGCCAGCCGGCTAAAGACGAAGCTAAAGCAGGAGAGCCAGAACTCGGACTCGGGTGACGAGTGCCCCGATTTCGAGCCGAACAATAGTGAAGACGAGGCGTTCCCGTTGCCGCCACCAGCCATGGTCAAGGTGGAGGCGTTCGACGAGGAGGACTTTGAGTACCAGGACGCCAGCATGTATGTGAAGACCGAGAGCACGGATATCTTCAGCAACGAGAAGGATAAGCTATTGGATGTCTTGCTGAACGAGGGTGACGGCCTGAAGCCGTTCGAGAGCCTGAAGGTGGAACAGGGCGCCGGCATTTTAGATGAGATTGCGGCCGTGCCGCTGGTAGAGGTGGCCGAGGAGGATGTCCTTGCGCTGCGTGGGTCTCGCCCAGATAAGCCTGGGATGAAGAGGCGTGGCAGACCGCCGAAGGGAGAAAGAAGGGAGCCGTCGGAACCTGTCGTCAAGAGAAAGTATCGCAAGAGAAACGCAAGATCACCATCGCCTGATGAATTCTCTTCTGGACCGAGGCGCATGGCCAAGATCAGTAAGAAGGAACTGAAGGAACGCCTCAAAATGATCAACAAGATGGAGAAGTCGTGGAAGTGCCCGCACTGCGTCAAGATCTACCATATTCGCAAGCCCTATGAGAAGCATCTGCGCGACGATCATAAGCTAACCGAGCAAGAGATGCGCGAAATCTTCAAGGACGTGGACGTTCACGCTAAGCTGGATGAGGAGGTATTCAAGTGTCCCATCTGCAGCAAGATCTACCTGGTCGAGAAGCGCCTGGTCACCCACATGAAAGTTCATGGCGAGGATGGCAATCTGACGTTCAAGTGCCCCTGCTATTGCAATCTTTTCTTCGCCACCAAGGAGCAGGCCACGGAACACGCCCGCGCCCAACACAAAGAACTGCTCTACTGTGAGAAATGCGACAAGTATATGACGGGTCACGACAGTCTCAAGAACCACGAGCGCAACTTCCACTCCAAGCGGGAGCCACGCAGTCAGGTGCGCAACCTTATCTGCGACAAGTGTGGCAAGAAGTTCACCGGTCGCACCTCACTCTCCGATCATGTGCGTTCGGACTGCGGCCGTCTGCCACTCTACGGCTGCTCCGTTTGCGGCAAGCATCTTTCCACTGCTGGCATTCTCAAGACTCACATGCTGCTCCACAAGGCAGACACTCCATACCAGTGCGACAAGTGCGGCAAGACGTTCAAGGTGAAGGCACAGTATAAGTCGCACTTGAAGACGCGACACACGGACTACAAGCCCTATAAGTGCCACCTCTGCCCCAAGGAGTATCCATACAGGGAAAGTTTGCTCACCCACATGACCGTACACACTGGCATTAAGCGATTCCTGTGCAATAACTGCGGAAAGCGGTTCACTTGCATCTCCAATCTGCAGGCGCACCGCAAGGTGCATGCCGACACCTGCGGCCAACTGCCCCTCAACGCCAAGGCAACACAGTATATGGGCGTGCAGCGCGGAAAGCTTCTGATGGGAGCCAAGCCGGAAGCGGGAATGGCATACGACGAAACGAAGACCCTGATCGCCGAGGAGGTCATCGAGAAGGACATGCCAATGGCCCAGGAGCTCAACTTCCCCTCGGACGGGTCGGCTCCGCTAGCCACCGTGCCACTAAACTACGCCTCCACGCACCTGGTGCCCCACATTGTTCTCCAGACCATGCAGGCAGAGGCACGGCGGCTCGAGTAA
- Protein Sequence
- MAPSSSSGAAAAAAAAAATKLLVEISTDGVPKLHCPVCNKALFSLAGYVKHVKKHQPPGGFECRQCDARYCSEEELTQHAKDEHPDSGSAPEDKPYVCDKCGVEYMYQEAYRRHCRTKCGEEKLSREESRPVECQCCSTRFSTDANLEKHRRSRPDTCGQPEYDPPGSSNQDMKRKNRKKMKRADSDEETTSDESEVDSDDDIPLASRLKTKLKQESQNSDSGDECPDFEPNNSEDEAFPLPPPAMVKVEAFDEEDFEYQDASMYVKTESTDIFSNEKDKLLDVLLNEGDGLKPFESLKVEQGAGILDEIAAVPLVEVAEEDVLALRGSRPDKPGMKRRGRPPKGERREPSEPVVKRKYRKRNARSPSPDEFSSGPRRMAKISKKELKERLKMINKMEKSWKCPHCVKIYHIRKPYEKHLRDDHKLTEQEMREIFKDVDVHAKLDEEVFKCPICSKIYLVEKRLVTHMKVHGEDGNLTFKCPCYCNLFFATKEQATEHARAQHKELLYCEKCDKYMTGHDSLKNHERNFHSKREPRSQVRNLICDKCGKKFTGRTSLSDHVRSDCGRLPLYGCSVCGKHLSTAGILKTHMLLHKADTPYQCDKCGKTFKVKAQYKSHLKTRHTDYKPYKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAHRKVHADTCGQLPLNAKATQYMGVQRGKLLMGAKPEAGMAYDETKTLIAEEVIEKDMPMAQELNFPSDGSAPLATVPLNYASTHLVPHIVLQTMQAEARRLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00615081;
- 90% Identity
- iTF_00546135;
- 80% Identity
- -