Basic Information

Insect: Drosophila atripex
Gene Symbol: Clamp
Assembly: GCA_035045925.1
Location: JAWNOP010000041.1:1586184-1588200[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00081 0.063 13.8 0.7 1 23 126 148 126 148 0.99

2 7 0.00017 0.013 15.9 0.7 1 23 367 389 367 389 0.97

3 7 4.4e-06 0.00034 20.9 0.1 1 23 395 417 395 417 0.99

4 7 2.5e-06 0.00019 21.7 3.2 1 23 423 445 423 445 0.99

5 7 2.8e-06 0.00021 21.6 0.3 1 23 451 473 451 473 0.98

6 7 1.2e-06 9.4e-05 22.7 0.4 1 23 479 501 479 501 0.98

7 7 5.2e-05 0.004 17.5 0.1 1 23 507 529 507 529 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00081	0.063	13.8	0.7	1	23	126	148	126	148	0.99
2	7	0.00017	0.013	15.9	0.7	1	23	367	389	367	389	0.97
3	7	4.4e-06	0.00034	20.9	0.1	1	23	395	417	395	417	0.99
4	7	2.5e-06	0.00019	21.7	3.2	1	23	423	445	423	445	0.99
5	7	2.8e-06	0.00021	21.6	0.3	1	23	451	473	451	473	0.98
6	7	1.2e-06	9.4e-05	22.7	0.4	1	23	479	501	479	501	0.98
7	7	5.2e-05	0.004	17.5	0.1	1	23	507	529	507	529	0.97

Sequence Information

Coding Sequence: ATGGAAGACCttactaaaaatataatctttACAAATGCAATCAACGGGCAACCGGCTACAATACAGTACCAAACTGCTGATGGCACCATTCTTAAGCAGCCGAAGATTGAGGGACAAAAAACTGAACAACCAACCTTCTACTACACAACGAATGGAAACGGAGGGACCGTCAATCTCGCCCAGCTTGCCACCACGGATGATAACAAAACCTGCTATATAGCCCAGCCAGTGGGTGGCTACAATTATGCCTTGGTGAATGGGATGCCGCTCAATCAGGGCACAGCGTTAGGCATCGCAACAGTGGATGCCCAAGGGCGCATTCAAATCGTCAATCAAAACAAACCAATTACAGCTAACACCATATCTAACATCAGCTTTAAGTGCGATGTCTGCTCGGACATGTTTCCCCACCTTGCTTTACTTAACGCTCACAAGCGAATGCATACAGATGgcgaacaacaacagcaacaacacacaTCACAGCAAGGTGGTGGAGACTCTATAGCAGTCGTCAACGCCCAGGGATTGGTGCAAGcgcaaaatattattaacaatGGACAGATGGGTCAAATACAGATTGTCGCATCTGACTCACTTGAGCCAGTTCAGCAGCCTGtaatgcagcagcagcatgatTCCAAAGCAAGCAAGTGCATAAATTGTGGAGGCCCTATCCTGCAGCAATCCAAACGAAAGGGCCCCAAGCAGGTCAGATGCGAAACCTGCATGCAAGCCGAGCAAGcggctcagcagcagcaacagcagcagcagcagcttttTGTTGCACAAGAcggcCAAATGGCGCATCCAGTGCAAATCATATCAACTACACCCCAGGCCCAGGCTCAGTTACAGCAAATTGTGGCCTCCCAGACAGGAGGTACGACCCCGAAAAGGGAACCGACTAGCGGATCCGGCCACCACCCAGTAAAAAAACGAAATTCACAGCAGATGACCAAATGTCAAAAGTGCAACGGATCCGGCATGGTAATCGTGGGACAGCACTCGCATGGGGGCCTTAGTGGAGCTGGAGGCTCAGTTAAACAAACGGTCACTGTAAAAACTGAGTGTTCGTCTTGCAGAAATCCATCGAAACCGTTTAGTTGTAATATTTGCGGTGGACTTTTTTCACGGTATTCGAGCCTTTGGTCACATAAAAAGCTACATAGTGGtgaaaaaaactacaaatgCAGTATCTGTGGACTTGCTTTTGCCAAAGCTGTTTATCTGAAGAACCACGCACGTATTCATACGGGCGAAAAGCCATACAAATGCCAAACTTGCGGTATGCAGTTCTCCCAATCGCCACATCTTAAAAATCACGAACGTACGCACAGTGGAGAGCGACCATACGTGTGTGGGGTTTGTGATAAAGGATTCGCCCGACACGCAACGCTTTGGAACCATAGGCGAATCCACACAGGTGAAAAGCCGTATAAGTGTGAGATTTGTGGTTCGGCATTCTCGCAGGCTGCGCATCTAAAGAACCATGCCAAGGTGCATTCCGGTGAAAAACCGTACAAATGTGAGATATGTTCGGCTGCGTTCGCTGATCGCTTTGCCCTTAAGCGACACCGGGGCATTCATCAGAAATACGGGCAAACAGCGCCCCGCCAACCTGGTGGAGAGGGGATGATAGTGCACAAGCAGGAGATACCTGATATGGATGACGAAGCTCAGCAGGAGGTTATAATTGGAGGATTATAG
Protein Sequence: MEDLTKNIIFTNAINGQPATIQYQTADGTILKQPKIEGQKTEQPTFYYTTNGNGGTVNLAQLATTDDNKTCYIAQPVGGYNYALVNGMPLNQGTALGIATVDAQGRIQIVNQNKPITANTISNISFKCDVCSDMFPHLALLNAHKRMHTDGEQQQQQHTSQQGGGDSIAVVNAQGLVQAQNIINNGQMGQIQIVASDSLEPVQQPVMQQQHDSKASKCINCGGPILQQSKRKGPKQVRCETCMQAEQAAQQQQQQQQQLFVAQDGQMAHPVQIISTTPQAQAQLQQIVASQTGGTTPKREPTSGSGHHPVKKRNSQQMTKCQKCNGSGMVIVGQHSHGGLSGAGGSVKQTVTVKTECSSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQPGGEGMIVHKQEIPDMDDEAQQEVIIGGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00537677;
90% Identity: iTF_00524568;
80% Identity: -