Basic Information

Insect: Drosophila atripex
Gene Symbol: -
Assembly: GCA_035045925.1
Location: JAWNOP010000052.1:18304854-18307294[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.043 3.3 8.4 0.7 1 18 33 50 33 50 0.91

2 11 3.2 2.5e+02 2.5 2.1 1 20 115 134 115 135 0.90

3 11 0.00065 0.05 14.1 1.0 2 23 178 199 177 199 0.97

4 11 0.00053 0.041 14.4 0.8 1 23 225 246 225 246 0.97

5 11 0.00023 0.018 15.5 0.9 2 23 254 275 253 275 0.97

6 11 0.00055 0.042 14.3 0.3 1 23 301 323 301 323 0.97

7 11 1.1e-07 8.5e-06 26.0 0.5 1 23 329 351 329 351 0.98

8 11 0.00097 0.075 13.5 5.5 1 23 357 379 357 379 0.98

9 11 4.6e-06 0.00036 20.9 0.9 1 23 385 407 385 407 0.97

10 11 0.0019 0.15 12.6 1.5 1 23 411 433 411 433 0.99

11 11 0.0012 0.096 13.2 0.1 3 23 460 481 458 481 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.043	3.3	8.4	0.7	1	18	33	50	33	50	0.91
2	11	3.2	2.5e+02	2.5	2.1	1	20	115	134	115	135	0.90
3	11	0.00065	0.05	14.1	1.0	2	23	178	199	177	199	0.97
4	11	0.00053	0.041	14.4	0.8	1	23	225	246	225	246	0.97
5	11	0.00023	0.018	15.5	0.9	2	23	254	275	253	275	0.97
6	11	0.00055	0.042	14.3	0.3	1	23	301	323	301	323	0.97
7	11	1.1e-07	8.5e-06	26.0	0.5	1	23	329	351	329	351	0.98
8	11	0.00097	0.075	13.5	5.5	1	23	357	379	357	379	0.98
9	11	4.6e-06	0.00036	20.9	0.9	1	23	385	407	385	407	0.97
10	11	0.0019	0.15	12.6	1.5	1	23	411	433	411	433	0.99
11	11	0.0012	0.096	13.2	0.1	3	23	460	481	458	481	0.97

Sequence Information

Coding Sequence: ATGTCATccccCCGCAGGATTGAGGACGCGGCgatggagcaggagcagcacgTGGAGCAGGCCGTCTTCACGGAGTGCACCTCCCAAGAGCTATTTTTCTACTGTGAAAGCTGCGGCAAGGTTTACGAGGACAGCGAGTCCTTTAATAAAGACCATATAGACGGGCAGTCCAGCTGCTGTGGCGTCGTCAAAGACGAGGAGGAGTTTATAGAGCAAACAACTGTGGAAGATGGGGACGAGGAAATCGTGGAAGCTGATGTACCTCTTTGGGAAGTGGTGGATTTGCCAGCAACTAGCGCCATGCCGGAGCAGGAAGAGCCCGACCTCAGCCAATCGGAGCGCTATTTCTGCTACGACTGCCATAGCATTTTTGAAAACAGGACCAGTGCCGAGGACCATGTGTGTCCGCGTGCCGAGTTGAGCTCGGCATCGGGGCCACAGCTAAGTGCGGCCGGCGCCCCCAAGCCAGCCATCCGCCGAAAGGTGTCCAGCACAAGTGCCAAATCAGGTACTACTGGAGCGTCCTCTATCAGCTGTGATATTTGCAACACTGTGTTCAGCTCGACAAAGTTTCTGAAATTCCACATGCGCATCCACGAAAAGCGCGGTTCCAAGAGTATTCAAGACGCTTTACCCGTAGGCGCGCACCAACAATACAGCGAACTGGATCAGTTCTATTGTGAGATATGCAATAAGAGCTTTGACGAAAACCTCCTTTCAGTGCACAAGCAGATGCACCAGAAGGTGGACGAGGAAATCAGTTGCAAAATCTGTAACCGAAAGTTTCAAGACTCGGTCACCTACCAGATGCACCTCAAGATTCACGAGAAGCCCCGAACCGTCGATGCTATGAAAAAATCCTCTACACGCTCCAATGGTAGCAACGACAAGGAAAGGGGCTTTGCGTGCCAGTTCTGTGAACGAGTGTTTGCCCGTCCCTATGAGAAAGTCAAGCACGAACGGGTGCATACTGGTGAGAAGCCCTACGCCTGCGAGGTGTGTGGAAAAACTTTCCGCGTTTCCTATTCGCTGACTCTGCACCTACGGACTCATACGGATATTCGCCCATATGTGTGCACCGTTTGCAACAAACGTTTCAAGTCTCACCAAGTATACTCACACCACCTGCGAATTCATAGTTCGGAGCGCGAATTCGCGTGCGATGTGTGCTCAAAGACCTTTCGTACCTCTGTTCAGCTCTACGCGCACAAAAATACTCATACCAAGCCATACCAATGCGCTGTGTGCAACCGACCGTTTTCTTCGATGTACGCCGTGAGGTGCCACATGCAAACTCACAAAGAGGAGAAGGGGAATCAGTCTTCAGGAGCCAAAGGCTCGTCCTCCTCCAGGACTATGCCGGCAGGAAAGTTCTGGTGCAAGATCTGCGGAGCTGAGTACGCGCGCGTCTTTGCCCTGCGTCTGCACATGAAGTCGGCCCACGGCTTAACAGAGGACACAGATCTGCCCCAGGAAGAACCACCTGTCACTGAAGGGCCGCATATGTCCGAGACTGAGGATTCGGAGACGGCGGTGCTGATAGCAGCTGCAGAGGCAGATGCCGCGTATATCAGTGCTGTGGTAAACGATGTCGATGTAGATGGTTCTGTGCCATCTTACCAGGAGGGCGTTGAGtttgttgtgGACAATTTTCACAGCGAGGAAATCATAACGGATTGGCTCAAGTAG
Protein Sequence: MSSPRRIEDAAMEQEQHVEQAVFTECTSQELFFYCESCGKVYEDSESFNKDHIDGQSSCCGVVKDEEEFIEQTTVEDGDEEIVEADVPLWEVVDLPATSAMPEQEEPDLSQSERYFCYDCHSIFENRTSAEDHVCPRAELSSASGPQLSAAGAPKPAIRRKVSSTSAKSGTTGASSISCDICNTVFSSTKFLKFHMRIHEKRGSKSIQDALPVGAHQQYSELDQFYCEICNKSFDENLLSVHKQMHQKVDEEISCKICNRKFQDSVTYQMHLKIHEKPRTVDAMKKSSTRSNGSNDKERGFACQFCERVFARPYEKVKHERVHTGEKPYACEVCGKTFRVSYSLTLHLRTHTDIRPYVCTVCNKRFKSHQVYSHHLRIHSSEREFACDVCSKTFRTSVQLYAHKNTHTKPYQCAVCNRPFSSMYAVRCHMQTHKEEKGNQSSGAKGSSSSRTMPAGKFWCKICGAEYARVFALRLHMKSAHGLTEDTDLPQEEPPVTEGPHMSETEDSETAVLIAAAEADAAYISAVVNDVDVDGSVPSYQEGVEFVVDNFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00566251; iTF_00539120; iTF_00488177; iTF_00477479; iTF_00476075; iTF_00580137; iTF_00550389;
90% Identity: iTF_00477479;
80% Identity: -