Datr006374.1
Basic Information
- Insect
- Drosophila atripex
- Gene Symbol
- -
- Assembly
- GCA_035045925.1
- Location
- JAWNOP010000042.1:783001-786136[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.1e-05 0.0047 17.3 2.7 1 23 174 197 174 197 0.96 2 14 0.003 0.23 12.0 1.1 1 23 214 237 214 237 0.95 3 14 5.4e-05 0.0042 17.5 2.6 1 23 310 333 310 333 0.97 4 14 0.002 0.16 12.5 0.7 2 23 388 409 387 409 0.95 5 14 0.017 1.4 9.6 0.6 1 23 553 575 553 575 0.94 6 14 0.0039 0.3 11.6 2.2 1 23 582 605 582 605 0.96 7 14 5e-05 0.0039 17.6 3.6 1 23 613 635 613 635 0.98 8 14 0.013 0.97 10.0 0.0 2 21 662 681 661 685 0.90 9 14 0.00083 0.064 13.8 1.3 1 23 720 743 720 743 0.96 10 14 0.011 0.89 10.2 0.2 1 23 780 803 780 803 0.96 11 14 3.9e-05 0.003 18.0 0.4 1 23 825 848 825 848 0.96 12 14 0.0046 0.36 11.4 0.2 1 23 858 880 858 880 0.96 13 14 4.8e-05 0.0037 17.7 2.1 1 23 886 908 886 908 0.99 14 14 1.1e-05 0.00089 19.6 1.2 1 23 914 936 914 936 0.97
Sequence Information
- Coding Sequence
- ATGACCAGGATATGCAGGATCTGTGGCGGAGCCGAGGGGCGGTACTGGATCGAAACGCCCCTGGAGAAGTACGCCGGGAAGACTTTCGTCCAGTTACTGACAGAACTGACCAAAATTGAGGTGACTGCACTTTTGAGTGAGAAGTTTCCGCAGTGGCTATGTGCTGAGTGCGCACGTAAGCTGGAAACGGCCTATGAATTAGTGATGCAAGCCAAAGAGACTCACAATCTGTGGATGCGGAAGTTAGACGACGAAACGAAGGATCAGGACGCGGAGTTGCAAGGGCTTGAAGCGTTGGAGTGTCTTAAGGAGACGCCTATCCACCTGTTTGATATCGAAGGAGTAACGATAAAAACAGAGGAACTAGACCAAACGCCTTCAGTCGCGAGAAAAGACCCTCTTGTCCGTCCGCGCATTGTGAAGCGGAGTATTACACATTTCAGTGGCTCTGACGACGACCAAGAGGATGTACCCCTTCGCCAGACCCGCAAGCACTCGGCTTTTTCTGTTCAAAAGCTGCATATTTGCAATATCTGCAACAAGGCATTCCGATATGTAACAAATCTGTATCGTCACAGGCAGAGGGATCATGGTGCGCCCGGAAAACCAAGAACTGACCCGGATGAAGATGAAAACTACTATAAGTGTGATCAGTGTGACAACTCATTCAAGTATGTAATGGATTTGGTGAAGCACAACAAAAATGAACACGATAAAAGTCTGCTGCCCTCCAAAATATACCTCCAAAGCTGTAAAATGCCTCGTCGAACAACCCCAACGCAGGATGAAGTAACCCGTTCAAGTCCCGCATCTACAGCAGGAACTTCGACGCAGCGAAAAACAAGCAACAGCGACACATTAGTGCACAGCTTCATCAAGACCGTGGTTCTCTCGGATGAAGATGAAAACAGCAGCTCAGAGAACTACTACAAGTGCGAGGACTGCACCAAGTCCTTCAAATACGTCATTAGCCTAATCAAGCACCAGCATAGCGAGCACTCTGGCGAAAACAGTCAGTTAGGAAGACGGGAGGTGGAGGAAGATCAGCGCGTTGGGGCTTCTACGTCAACTGCAGCTGTACTGCCGAAACCATCAAGGATCAACCGGCGAGTCAATGGATTTGATCTTCATCGATGCGAGCCCAATGGGGCTAAGGAAATAAAGTGCATGATTTGCTTGAAACGGTTTACAAAGCTTCGTCAGTTAAGAGATCACCTTGAAGCCCATCCGactgattttgattttgaagcTCATGGGGAACCAATCGAAAGAATTGCCGAGGGATTTTTCAAGACCGCTGTAGAGTCGACTCCGGAGGGCTTAAAGCGTCGGATATTAAGAGATTTGAGAATGGGCGTTTATGGGCGCTACTATTCCATCACAAATCAAGCTCGTTACGAAATGAGTCTGGATAGTTCGGATACAGAcagtgatggtgatggtgaggATGTTGTGGTGAGACGAAGCTATGTCTGCGATCTGTGCGATGATCCGGATGCTAGGTGGCCGCGAAAATATCAAATTCACAAGCACCACCTCCAGGAGCACAACTGGTTAGATGCTCCCCACGTCTGCCTGCGCTGCGATTCCAGGTTCTTGAATGCCGATCTTCTGGACCATCATACTAGCCAACTGTGTCAAAATACCCTTAAGCGATTCATGTGTGACAAGTGTCCGCAGCGCTTTTTTTGGCGAAGAAATCTTCGCGCCCATCTTGTGGAGCATAAGAGCAAGCAAGACATATACCATTGCGATCAGTGCTCCCGCAGCTATCAGGACAAGAGTGCCGTAACCAAGCACAAGCTAATGGTGCACCGGGATAGTAGCACGCAACTATTTCCCTGCCGGTGGTGCACTCGCACCTTCTACCGCCCCTCCTTGTTGCACAAGCATCTCAAACGCCATGGATTTAGTGGTGATGACCTCCCGTTGGCAGAAACTCTCTTGGCTGATGCCGCTAAGGCGACTAGGTCAAAAACCATCCAGTGCAAGCTGTGCGAAATCCAGTTCATCAGCGTGGTAGATCTACGTCGGCACATAGGCATGCAGGGCCACAGTGACCAGCCGTCGGCCTACATGATAAGCACGGAAGCTGGCTTCGAAATGCTCATAGATGACACCGATGACAGTGATGAGGAGAGCTCCTCCGGCAGGTGCTACTCCTGTGATATGTGCCAGCTGAGTTTCCGGCGCAGGAAAGATATAAACGAACATCAGTACTCCCTGCACAGCTTCGATAAGCTGCCCTTTGCCTGCGAGCACTGCATTTTTAAAACGGTGGATAAGGGTATCCTGGAACATCATTTAATCACTCAGTGTCGAAACAATGAAAAGAAATTTATCTGCCCGCGCTGCGGATACAAATTTATGTGGGAAGAGAGTCTGACCCAGCACTTAGCCACTCAGCATCAAACCAAAAGTCAGACGCTTCCGGAACAACAGACACCACTGCGACGCAAGAGAAGGTTCCGCTATCAGTGCCCTCATTGTTGGCGATCCTTTGTGGCTCAGCCAAGTCTGGACAAACATATCCGAGACATGCATGTGGCCAAAAGGAACCTCGGAAAGAAGTATCTTTGCTCTCTGTGCGGCTTAGAAGCGCAAACTCCCAACAAACTTAACATTCATATGCGGCGGCACATGGGCGAGAAACCATTTAAGTGCGATCTCTGTGACATGCGCTTTACGGTTTTCTACGAGCTGAAGGTCCACCGGCGAAAGCACACGGGCGAAAGACCCTACCAGTGCACCTTCTGCTCCAAGGAGTTTGCCCGCCCAGATAAGTTGCGACGACATGTTTTTATCCACAACGTAAAACCATAG
- Protein Sequence
- MTRICRICGGAEGRYWIETPLEKYAGKTFVQLLTELTKIEVTALLSEKFPQWLCAECARKLETAYELVMQAKETHNLWMRKLDDETKDQDAELQGLEALECLKETPIHLFDIEGVTIKTEELDQTPSVARKDPLVRPRIVKRSITHFSGSDDDQEDVPLRQTRKHSAFSVQKLHICNICNKAFRYVTNLYRHRQRDHGAPGKPRTDPDEDENYYKCDQCDNSFKYVMDLVKHNKNEHDKSLLPSKIYLQSCKMPRRTTPTQDEVTRSSPASTAGTSTQRKTSNSDTLVHSFIKTVVLSDEDENSSSENYYKCEDCTKSFKYVISLIKHQHSEHSGENSQLGRREVEEDQRVGASTSTAAVLPKPSRINRRVNGFDLHRCEPNGAKEIKCMICLKRFTKLRQLRDHLEAHPTDFDFEAHGEPIERIAEGFFKTAVESTPEGLKRRILRDLRMGVYGRYYSITNQARYEMSLDSSDTDSDGDGEDVVVRRSYVCDLCDDPDARWPRKYQIHKHHLQEHNWLDAPHVCLRCDSRFLNADLLDHHTSQLCQNTLKRFMCDKCPQRFFWRRNLRAHLVEHKSKQDIYHCDQCSRSYQDKSAVTKHKLMVHRDSSTQLFPCRWCTRTFYRPSLLHKHLKRHGFSGDDLPLAETLLADAAKATRSKTIQCKLCEIQFISVVDLRRHIGMQGHSDQPSAYMISTEAGFEMLIDDTDDSDEESSSGRCYSCDMCQLSFRRRKDINEHQYSLHSFDKLPFACEHCIFKTVDKGILEHHLITQCRNNEKKFICPRCGYKFMWEESLTQHLATQHQTKSQTLPEQQTPLRRKRRFRYQCPHCWRSFVAQPSLDKHIRDMHVAKRNLGKKYLCSLCGLEAQTPNKLNIHMRRHMGEKPFKCDLCDMRFTVFYELKVHRRKHTGERPYQCTFCSKEFARPDKLRRHVFIHNVKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550395;
- 90% Identity
- iTF_00550395;
- 80% Identity
- -