Dath014416.1
Basic Information
- Insect
- Drosophila athabasca
- Gene Symbol
- SPAC11D3.17
- Assembly
- GCA_008121215.1
- Location
- VMQQ01000020.1:1589349-1591472[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.029 2 8.8 1.6 2 23 286 308 285 309 0.94 2 10 0.011 0.74 10.1 1.7 6 23 317 334 317 334 0.98 3 10 8.9e-06 0.00061 19.9 2.9 1 23 340 363 340 363 0.93 4 10 0.00021 0.014 15.5 2.2 1 23 371 393 371 393 0.97 5 10 0.00021 0.014 15.6 0.1 2 23 399 421 398 421 0.95 6 10 0.12 8 6.9 0.1 2 23 427 448 426 448 0.95 7 10 6.6 4.5e+02 1.4 6.9 2 23 457 478 456 478 0.91 8 10 0.00019 0.013 15.7 0.3 2 23 487 509 487 509 0.96 9 10 5.5e-06 0.00037 20.5 1.0 1 23 515 537 515 537 0.98 10 10 6.5e-05 0.0044 17.1 5.5 1 23 543 566 543 566 0.98
Sequence Information
- Coding Sequence
- ATGATTTGCCGATTGTGCCTAAACAGCGTCAGCGACACGGACACCATCCAGATCTTCGAGAGCATTGGCCTCACCCTGAACGTGGCAACTGTGTTGGCAAAATACTTTTGGTTTGAGCCAAAAAACGATGATCCCATATCGACGGTGCTTTGTGTGGGTTGCTGGAACCAAGTGAGCCAATTCCACGAGTTCTTTGTTGCCGTGGAGAAGGCGCACCGGCTGCTCACCGAACGCTTCTCTCTTAATGTGGGGGAAAAGTCTAACAGCGTACAGCCAGAGATTGAGGACCAGCTTCCTGATGAGGCAGAGGAGCCGCACCAGTTGCCAGATGAGAAGGAAGAGCTAAGCCATTTGCTTGATGAGTCGGAGAGGCCACACCAGTTGTCTGATGGGGCGGAGGAGCTGCTGTTCCAACAGGAAATGGACGTGGGTCATCAGGACTGCGATAGCAATACTTCCTTCAGCAATGAGCAGTTCCTTAGCCAGGTACTGTGCGAGCAGGATACCACTGATGACCAGCAGACAATAGAGAAACAAGAGGAAGTGGATCTGAAGAATGTACCACTGATTGTTGTAGAAGAACGTCGGGAAACACGCTCGACAGCCAGAATAAAATCCCATCAAGCTGCTAATATGGAGCTGTTAGGAGCAGATCCAGAATCCTTGGCAGCAGATACGGAATCTCTAGCAGTCACAGATAGCGAATCCAAACCGCTGACCTCTTCAACTGGTGTTGCGAAACGACGAATGCGGAGACGCAAATCCGAGGAACACTCAATGAAAACCAAACGTTACGTGGACTATAAAAAGTCCATGCTGGATATCGACCAGAAGATCGCTGGCCACATGCGTCTCACCTGCGACATATGCCACCAGGGCCTCGCTACCTTCCTGCTGCTCCGCAAGCACATGTTGCAGGTGCATCACCGCAAGGGCTATGCCATCTGCTGCCACAAGAAGTTCTACAAGCGCTCCGCTCTGACGGACCACATTGACCGGCACACAGATCCCGAGAAGTTCAAGTGCACTGAGTGCGGCAAGAGTTTTGCGGATAAGCAATGCCTGCGCAATCACGAGCTGCTGAAGCACCAGCCGGACGATGTGAAGGTCTTCATGTGCGAGCAGTGTCCCAAGCGCTACACGAAGCACTATTTGCTGGAACAGCATCGCATCATTCACAAGGACCGCACTATTCCGTGTGGCATCTGCGACAGACGGTTTCCCAATGACTCCCTGCTCAGCACTCATGTGAAAATGGTCCACAGCAACTATGGCACAATGTGCGACATCTGCGCCCAGGTGATACGCGGAAGAGCGGCCTTTAAGCGCCATCAACTAGAGCACTCTGGGGTCTCAGAACCGAAAGTACAGTGCGACATCTGTGGATCGTGGCACAAGAACAGGCATAGCCTGAAGAAGCATGTGCGTCGGCATTCGGGCTCCTCGGTAGAAGTGCGCACGTGCAAGGTGTGTGGAAAAGTGTCGCCCAATCGGAGCGCTATGCTGAGCCACCAGCGATATGTGCATTTGGCGGATCGTAAGCACGAGTGCAGTGTGTGCAACAAGGCCTTCAAGAAGGCCATCACCCTCAAGGAACACATGGCCACGCATACGGGGGAGGTGCTCTACAAGTGTCCCCACTGCCCCAAGACATTCAACTCGAATGCCAACAAACATACCCATCGCAAGAAGGCTCACCCCAAGGAGTTCGAGGAGGCACGCAAGGCGCGCACCGAAAGCCGAATGGCCACCACCGAGGATGGGCCTGGGCCCCACATTATTACTATCTCAACGGAAGGCGACGAGGGCGAGAGCGAAACACACAATATTCTGCTTACCGCAACCGAGGAGGAGCTCAAGGCCGAGGGTATTGAGTTCACCCTTTGCCTTAGTCCGCAAGCGGCAGAGTGA
- Protein Sequence
- MICRLCLNSVSDTDTIQIFESIGLTLNVATVLAKYFWFEPKNDDPISTVLCVGCWNQVSQFHEFFVAVEKAHRLLTERFSLNVGEKSNSVQPEIEDQLPDEAEEPHQLPDEKEELSHLLDESERPHQLSDGAEELLFQQEMDVGHQDCDSNTSFSNEQFLSQVLCEQDTTDDQQTIEKQEEVDLKNVPLIVVEERRETRSTARIKSHQAANMELLGADPESLAADTESLAVTDSESKPLTSSTGVAKRRMRRRKSEEHSMKTKRYVDYKKSMLDIDQKIAGHMRLTCDICHQGLATFLLLRKHMLQVHHRKGYAICCHKKFYKRSALTDHIDRHTDPEKFKCTECGKSFADKQCLRNHELLKHQPDDVKVFMCEQCPKRYTKHYLLEQHRIIHKDRTIPCGICDRRFPNDSLLSTHVKMVHSNYGTMCDICAQVIRGRAAFKRHQLEHSGVSEPKVQCDICGSWHKNRHSLKKHVRRHSGSSVEVRTCKVCGKVSPNRSAMLSHQRYVHLADRKHECSVCNKAFKKAITLKEHMATHTGEVLYKCPHCPKTFNSNANKHTHRKKAHPKEFEEARKARTESRMATTEDGPGPHIITISTEGDEGESETHNILLTATEEELKAEGIEFTLCLSPQAAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00564158;
- 90% Identity
- iTF_00471844;
- 80% Identity
- -