Basic Information

Insect: Drosophila athabasca
Gene Symbol: -
Assembly: GCA_008121215.1
Location: CM017796.1:53110813-53113460[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.06 4.1 7.8 3.1 1 23 281 303 281 303 0.97

2 11 3e-06 0.00021 21.3 0.2 1 23 309 331 309 331 0.99

3 11 0.00033 0.022 14.9 4.0 1 23 337 360 337 360 0.97

4 11 0.31 21 5.6 3.8 1 20 366 385 366 388 0.95

5 11 0.0071 0.48 10.7 1.7 1 23 394 416 394 416 0.97

6 11 3.5e-05 0.0023 18.0 0.9 1 23 422 444 422 444 0.98

7 11 0.00066 0.045 14.0 4.2 1 23 452 475 452 475 0.96

8 11 0.00084 0.057 13.7 0.4 2 23 482 503 481 503 0.97

9 11 0.00085 0.058 13.6 1.2 1 23 509 531 509 531 0.98

10 11 1.3e-06 8.5e-05 22.5 0.6 1 23 537 560 537 560 0.97

11 11 4.3e-07 2.9e-05 24.0 1.7 1 23 574 596 574 596 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.06	4.1	7.8	3.1	1	23	281	303	281	303	0.97
2	11	3e-06	0.00021	21.3	0.2	1	23	309	331	309	331	0.99
3	11	0.00033	0.022	14.9	4.0	1	23	337	360	337	360	0.97
4	11	0.31	21	5.6	3.8	1	20	366	385	366	388	0.95
5	11	0.0071	0.48	10.7	1.7	1	23	394	416	394	416	0.97
6	11	3.5e-05	0.0023	18.0	0.9	1	23	422	444	422	444	0.98
7	11	0.00066	0.045	14.0	4.2	1	23	452	475	452	475	0.96
8	11	0.00084	0.057	13.7	0.4	2	23	482	503	481	503	0.97
9	11	0.00085	0.058	13.6	1.2	1	23	509	531	509	531	0.98
10	11	1.3e-06	8.5e-05	22.5	0.6	1	23	537	560	537	560	0.97
11	11	4.3e-07	2.9e-05	24.0	1.7	1	23	574	596	574	596	0.97

Sequence Information

Coding Sequence: ATGTCGAAATCGGGTCGTAAAAAGACCGAGGATCTGCAGTCATTCCTGAACAATTTCCACAAGGAAATTGAAGACGGCGATGACAAAGTTGTGCATAAGATTCTAAAATCAATCAGAGCGGAGGACGGAGTCGCCGAGGACGATGACGACTATATTGCTGAAGTCTCTGAGGAAGAACAGGCAGAACAAGATGACGACTACGATCCAAGTGAAGAGGAGGACGATGAGGACAAATACTTCATTGACGATGACGGGAACTGCTACATCAAGACTACGCCCAAAAAGCAGAAAGAGCTGCAGGAGAAACTCCAGCACTCGGCCAAAAAACCCGGCAAGAACACCCGTTCAGGGGCTAGTAAGCCGTCCAACAAAGTTATCAATTTACGTCCTGCCCAATCTTCCCCGAAACGGGTCACAAGATCCGCAGCAGAGCCAAGACCAATCAGTGTACGAGCAACGAGTGCAATAGCAGCAGCTGCTACTCCCAAGCCGCCAGCAAAGACACTAGCTAATTCTACCAGGGGCAGGCCCAAAAAGATGCAAAAGGTTCCGTCACCGAAGCTCGAGCCGAAGTCTGAGCCGATGGACATCCAGCGGGAGATCGAGGAATTGGTGGCTGACCCAGATGTTGCAGCTGCCGTAGCCGACATCACGGGAAACTCCGAATACACAATTGACAATGATGCCGTAGAAGCTCTGGATAATGTGGCTGACGGCGAAGTCTATGAGTTCGATGACAATCCACCAGAAGACACCAAACAGGAACTGAAGATCACATCCAGGCAGTTCTTGTTGAAGCCTGTGGCAATTACGGAGAAAAAAACGGCCAAGGTGCATCAGTTCAACTGTTCTCAGTGCCCCTATACGACCAACAAAAAGTTTCTCATTACGCGCCACAACAAAACACACGCGAGTGAGTTTTCCTACAAGTGCTCCATATGCGATCGAGGATTCAAATCCAATGTGGGATTGGTCAACCATGTGAACACCCATTTGGGGAATAAGCCGCACAAATGCAAGCACTGCGAGAGCGCCTTTGTCACCAGTGGCGAGCTGATAAGACACACCAGATACAAGCACACCAAAGAGAAGCCGCACAAATGCACAGAGTGCAGCTACGCCTCGGTGGAACTGACCAAGCTGAGACGCCACATGACCTGTCATACAGGAGAGCGACCGTACCAGTGTCCCCACTGCACCTACGCCTCGCAGGACATGTTCAAGCTGAAGCGACACCTCGTTGTCCACACGGGCGAAAAGAGATATCAGTGCGATATTTGCCAGTCCCGGTTCACGCAGTCCAATTCCCTGAAGGCGCACAAACTTATTCACAGCGTTGTGGACAAACCCGTGTTCCAGTGCGAACACTGCCCTACCACCTGTGGCCGCAAGGCGGACCTGCGACTTCACATCATGCACATGCATACGGCAGACAAACCGATACCATGCAAGCGCTGTGGTCAGAATCTGCCCGATCGTTACCAGTATAAGCTGCACATAAAGACCCATGAGGGCGAGAGATGCTATCGTTGCAAGCTCTGCGAGTACGCCTCTGTTTCCCAGAGGCATTTGGACTCGCACATGCTCGTCCACTTGGATGAGAAGCCCTTCCAGTGTGAAGTATGCCCACAGGCCTTCCGTCAGCGCCAGCTGCTGCGTCGCCACATGAATCTGATGCACAACGAGGAATACACGAGGCCCGAGCCACGCGAGAAGATGCACAGCTGCCCGCAATGTCCACGGATATTTACCCACAAGGGGAATCTGATACGGCACATGGAGATCCATGACGATTCGAAGAACGCTCGCGAGGAGCGGCTCAAATTAAAAATGGGTCGCAATATTCGTCTGCAGCCCGATGGCAGCATCGTGACTCTGGTCAACGAAAGCGACTTTGACAGAGGACTCATTGACTTggatgacgacgacgaggaaAACTTTGAACTGGCCGAAGTGGAGCCCGACAACTACGAGGATGAAATTCTAGAGGCCATGGGCACCCCTGcagcaaaatcaaaaaaaagtCCGGTCATTATCAACACACAACCCAGAAAGAGTTCCATCAATCAGCCCGTCATCATTAATCGCCGCCTAAGGGCCAAAGGCGGCACCAAGACATTCCACATTAAGGAAGAGCCGAACACCTCAGAGTTCACGGTTGAACTGCAGGGCGATGATGGTCAGGTAATGGTCGTGGAACTGGTTAATGGCGACGAGGAGGTGGTAGTCAAACGCGAGCCCAAAGGCTCCAAGATCAATGCTGCCAATTGCTTTGGGTTTGAGgACGATGACGCCGAATACGCGGATTACGGGGAACAAGATACCGAAATGGATGGAACTTCACAGGAATTTCTACAGCTAATGGATATGATCGAGCAAGATACTTAG
Protein Sequence: MSKSGRKKTEDLQSFLNNFHKEIEDGDDKVVHKILKSIRAEDGVAEDDDDYIAEVSEEEQAEQDDDYDPSEEEDDEDKYFIDDDGNCYIKTTPKKQKELQEKLQHSAKKPGKNTRSGASKPSNKVINLRPAQSSPKRVTRSAAEPRPISVRATSAIAAAATPKPPAKTLANSTRGRPKKMQKVPSPKLEPKSEPMDIQREIEELVADPDVAAAVADITGNSEYTIDNDAVEALDNVADGEVYEFDDNPPEDTKQELKITSRQFLLKPVAITEKKTAKVHQFNCSQCPYTTNKKFLITRHNKTHASEFSYKCSICDRGFKSNVGLVNHVNTHLGNKPHKCKHCESAFVTSGELIRHTRYKHTKEKPHKCTECSYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHLVVHTGEKRYQCDICQSRFTQSNSLKAHKLIHSVVDKPVFQCEHCPTTCGRKADLRLHIMHMHTADKPIPCKRCGQNLPDRYQYKLHIKTHEGERCYRCKLCEYASVSQRHLDSHMLVHLDEKPFQCEVCPQAFRQRQLLRRHMNLMHNEEYTRPEPREKMHSCPQCPRIFTHKGNLIRHMEIHDDSKNAREERLKLKMGRNIRLQPDGSIVTLVNESDFDRGLIDLDDDDEENFELAEVEPDNYEDEILEAMGTPAAKSKKSPVIINTQPRKSSINQPVIINRRLRAKGGTKTFHIKEEPNTSEFTVELQGDDGQVMVVELVNGDEEVVVKREPKGSKINAANCFGFEDDDAEYADYGEQDTEMDGTSQEFLQLMDMIEQDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00487449;
90% Identity: iTF_00471796;
80% Identity: -