Basic Information

Insect: Drosophila asahinai
Gene Symbol: SCRT1
Assembly: GCA_008042795.1
Location: VNJZ01002856.1:54526-58563[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.1e-06 0.00019 21.9 4.1 1 23 472 494 472 494 0.99

2 5 0.00042 0.038 14.7 0.1 2 23 504 525 503 525 0.98

3 5 3.9e-06 0.00035 21.1 0.5 1 23 529 551 529 551 0.97

4 5 9.4e-09 8.5e-07 29.3 0.5 1 23 557 579 557 579 0.98

5 5 3e-05 0.0027 18.3 2.6 1 21 585 605 585 606 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.1e-06	0.00019	21.9	4.1	1	23	472	494	472	494	0.99
2	5	0.00042	0.038	14.7	0.1	2	23	504	525	503	525	0.98
3	5	3.9e-06	0.00035	21.1	0.5	1	23	529	551	529	551	0.97
4	5	9.4e-09	8.5e-07	29.3	0.5	1	23	557	579	557	579	0.98
5	5	3e-05	0.0027	18.3	2.6	1	21	585	605	585	606	0.95

Sequence Information

Coding Sequence: ATGTCCGTGGACTTCATACTGCCCAATCGCAACAAGATCCAGACGATTGCCTACgcgagtgccagtgccagcaaGAAGTATGTGCCGGCAGCGGGTTCGGGCTCCTCTCTATCCTCGGGCTTAGCTCCAGGatcgggaacgggaacgggatccggttccggttccggaGGCTCTGACCTGCAAAGCTGGCGCCGCCCAAAGCCCAGGATCTCTGCGGGCAAGCTCAAGGCGGCGGTGGAGGACAAGTCTTCAGTGTCAGCCAGTTCGGTGCTGAGAAATGCCAATGGCAGCAGCGTTAAGTCATCTGTCAAAGCGCTGGCCAAGAGGAGCTCCCGATCAGTGCTCAAGCGGGAGATCATCGAgctggacgacgacgaggaggaggaggagcgcgaGGATCAGCTGTGCGAGCATCTGGAGTGGTCAGCTGCCCAGTCCCTCGTCCAGATGAACTCCTCCAAGCAGGAGAAGCAGCGGCGAGCGGGAACCAGTCAGTCGGGGGGTGCCAGTGTGGCAGCTCCCATATCCGCTTCAGTATCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGCAAGGTAATCTTCTATGCCCCGCCCGCCAGCGCCACAGGAGCGCCCCGCCAGCCGGAGCCCGTGACCCTGAAGAGGGAGCGGGAGAGGGAGCGCGAACGGGAGCGCGAGCGCGAGCGTGAAAGAGTGAGGGAGCAGCAAcaggtggcggcggcatcaGCGGCATCGGCGGCATCGATATACCGCGGGCGCAGCGTCGAGGAGACGGAGGCCGCCCACGATCTGCTCTCGCTGTCGCAGAGCCTGCCGCCGCTGATTCCGCCGTGTGTGGTCACCATCatgaagcaggagcaggagcagctgcgctGCCCGGAGATCCAGGAGATATCGAACAGCGCTTCCAGCCGCTCGTCGCAGTCGACCATCCGGTTTATCGGCAGCAGCTCCTACGACCTGATGCACGGCTCTGCGGAGGGCGCCAGCACCAACTGCTCGCCGCTGACGCCGCCCAACTCGGACCACAGCTCCGACGTGGATATAGACATGTCTTCCTCCTCCGAATCGGGGGTCCAGCACTGgggcagcaagcagcagcagcagccgtcgtcgtcgtcgtcgtcgtcccaCAATCACCACCAGCAGCCGCCGAGGGCGTCGGCCTTGAAGATGTGCCTCAACATGCTGGACGGCCGGACCAAGGCCAGCAAGGCCCGGCAGGAGCCGGTGCTTGGGCCGCGGCCCAAGAGCGTCCAGAGCAACGCCTCCAGTCCGGGCGGCGTCGATCCGCCCGAGGTGGCCGTGTCCGTGGCCCCCAgtaactcctcctcctccaccgcctCGGTGGCGGGAGCTGGCGGCGGGAGCGGCGAGAACTACGCCAAGCGCAAGCGCGGATGCTACAAGTGCTGCGAGTGCGGCAAGCAGTACGCCACCTCCTCGAACCTCTCCCGTCACAAGCAGACGCACCGTTCCCTGGACTCGCAGTCGGCCAAGAAGTGCAACACCTGCGGCAAGGCGTACGTCTCCATGCCGGCCCTGGCCATGCACCTGCTCACGCACAAGCTCTCGCACAGCTGCGACATCTGCGGCAAGCTCTTCTCCCGGCCCTGGCTGCTCCAGGGCCACCTCCGATCGCACACCGGGGAGAAGCCCTACGCCTGCGTCCACTGCGGCAAGGCCTTCGCGGATCGCTCCAACCTGAGGGCCCACATGCAGACCCATTCGGGGGACAAGAACTTCAAGTGCCATCGATGCAACAAGACGTTCGCCTTGAAGTCGTACCTCAACAAGCATCTGGAGTCGGCCTGCCTGCGGGATGCCGGGGCCATTGGGCAGGGCAAGGACATGGATCTGGATggggaggaggacgaggaggagctgcacaAGCAGGACGACCTGGAGGGCGACGAGCTGGACAGCGACGAGAACAGCCAGGACATCGTGGTGGCCTAA
Protein Sequence: MSVDFILPNRNKIQTIAYASASASKKYVPAAGSGSSLSSGLAPGSGTGTGSGSGSGGSDLQSWRRPKPRISAGKLKAAVEDKSSVSASSVLRNANGSSVKSSVKALAKRSSRSVLKREIIELDDDEEEEEREDQLCEHLEWSAAQSLVQMNSSKQEKQRRAGTSQSGGASVAAPISASVSLRRPVGRAPAEDGKVIFYAPPASATGAPRQPEPVTLKRERERERERERERERERVREQQQVAAASAASAASIYRGRSVEETEAAHDLLSLSQSLPPLIPPCVVTIMKQEQEQLRCPEIQEISNSASSRSSQSTIRFIGSSSYDLMHGSAEGASTNCSPLTPPNSDHSSDVDIDMSSSSESGVQHWGSKQQQQPSSSSSSSHNHHQQPPRASALKMCLNMLDGRTKASKARQEPVLGPRPKSVQSNASSPGGVDPPEVAVSVAPSNSSSSTASVAGAGGGSGENYAKRKRGCYKCCECGKQYATSSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDICGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDKNFKCHRCNKTFALKSYLNKHLESACLRDAGAIGQGKDMDLDGEEDEEELHKQDDLEGDELDSDENSQDIVVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00572086;
90% Identity: iTF_00483154;
80% Identity: -