Basic Information

Insect: Drosophila asahinai
Gene Symbol: sna
Assembly: GCA_008042795.1
Location: VNJZ01007360.1:26769-27932[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.3e-05 0.0039 17.8 2.2 1 23 242 264 242 264 0.97

2 5 6.9e-06 0.00062 20.3 0.6 1 23 277 299 277 299 0.98

3 5 1.9e-08 1.7e-06 28.3 0.4 1 23 303 325 303 325 0.97

4 5 1.4e-09 1.3e-07 31.9 0.3 1 23 331 353 331 353 0.99

5 5 1.8e-05 0.0016 19.0 1.2 1 19 359 377 359 380 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.3e-05	0.0039	17.8	2.2	1	23	242	264	242	264	0.97
2	5	6.9e-06	0.00062	20.3	0.6	1	23	277	299	277	299	0.98
3	5	1.9e-08	1.7e-06	28.3	0.4	1	23	303	325	303	325	0.97
4	5	1.4e-09	1.3e-07	31.9	0.3	1	23	331	353	331	353	0.99
5	5	1.8e-05	0.0016	19.0	1.2	1	19	359	377	359	380	0.94

Sequence Information

Coding Sequence: ATGGCCGCCAACTACAAGAGCTGCCCGCTGAAGAAGCGCCCCATCGTCTTCGTGGAGGAGCGTCTGCCGCAAACGGAGGCCTTGGCCCTGACCAAGGACTCGCTGTTTGCCCAGGACCAGCCACAGGATCTCTCGCTGAAGCGGAGCCGAGAGGAGGACTACCAACAGCAGCCGGAGCCGAAGCGCGACTACGTGCTCAACCTCTCCAAGACCCCGGAAAGGATTCATGCCAGCCCCAGCTGCCTGCTGTCGCCGCCAGTTGAGCCCAGCCAGGACTACCAGCCCACGGACATTCACATGCGGGGACTGACAGCGGGCACCACGGGCTACACCACCAGTGTCCCGGCCAATCCCTTCCAGTCCGCCTTTGTGATGGCCGCCGGCTGCAACCCGATCTCGGCCCTGTGGAGCAGCTACCAGCCCCACCTGGCCGCCTTTCCCTCGCCCGCCAGCTCCATGGCTTCGCCGCAGTCGCCGCAGTCCGTGTACAGCTACCAGCAGATGACGCCTCCCTCGAGTCCGGGATCCGACCTGGAGACCGGATCGGAGCCAGAGGATCTCTCCGTGCGCAACGACATTCCACTGCCGGCTCTGTTCCACCTCTTCGACGAGGCGCggtccagcagcagcggcgccaGTGTGAGCAGCTCCTCGGGCTACTCCTACGTTCCCACCGCCGCCACTCCGGCCTCCAACGCGGCCAATCTCGCCAAGAACTACCGCTTTAAGTGCGAGGAGTGCCAGAAGATGTACTCCACCTCGATGGGCCTGTCCAAGCACCGTCAGTTCCACTGCCCGGCCGCCGAGTGCAACCAGGAGAAGAAGACGCACTCGTGCGAGGAGTGCGGCAAGCTCTACACCACCATCGGAGCCCTCAAGATGCACATCCGCACCCACACGCTGCCCTGCAAGTGCCCCATCTGCGGCAAGGCCTTCTCGCGCCCCTGGCTGCTCCAGGGTCACATCCGCACCCACACCGGCGAGAAGCCCTTCCAGTGCCCGGACTGCCCGCGATCCTTCGCCGATCGCTCCAACCTGAGGGCCCACCAGCAGACGCACGTGGACGTGAAGAAGTACGCCTGCCAGGTGTGCCACAAGTCCTTCTCGCGGATGTCGCTCCTGAACAAGCACTCCAGCTCCAACTGCACCATCACCATTGCGTAG
Protein Sequence: MAANYKSCPLKKRPIVFVEERLPQTEALALTKDSLFAQDQPQDLSLKRSREEDYQQQPEPKRDYVLNLSKTPERIHASPSCLLSPPVEPSQDYQPTDIHMRGLTAGTTGYTTSVPANPFQSAFVMAAGCNPISALWSSYQPHLAAFPSPASSMASPQSPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHLFDEARSSSSGASVSSSSGYSYVPTAATPASNAANLAKNYRFKCEECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNCTITIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00602797;
90% Identity: iTF_00593998;
80% Identity: -