Dari001524.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila arizonae
Gene Symbol
-
Assembly
GCA_001654025.1
Location
NW:8475899-8486016[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 0.056 3.1 7.9 0.4 1 23 548 570 548 570 0.96
2 7 0.27 15 5.7 0.6 2 19 575 592 574 593 0.97
3 7 5.1e-06 0.00029 20.6 0.3 1 23 599 621 599 621 0.99
4 7 0.0026 0.15 12.1 4.2 1 23 631 653 631 653 0.98
5 7 0.0006 0.034 14.1 0.1 2 23 660 681 659 681 0.95
6 7 9.4e-07 5.3e-05 22.9 1.3 1 23 687 709 687 709 0.98
7 7 7.1e-05 0.004 17.0 3.5 1 23 715 737 715 737 0.98

Sequence Information

Coding Sequence
atggccagcagcagcagcagcgcaacaaaTGCAGTCAGCAGCAACGCAACTGCGCTGCCTTCACTCTTtgccggcagcaacaacaacaacagcagcagcagcaataataatagcagTGGCTGCGCTGCCGCCGTCAACGTCGCGGCCAAAGATATGGACGGACTGATTGCCATCAATGATAGCGCATTATCGCAACAAATCGAATTTATACTACAAGATGCTCCCATGGAGCAGGatgacgagcagcagcagctgcaattgcagcagcagctcaatatggcagcagcagcagcgacggcggcagcagcggcagcggcagctgcgtcCAAGCTCGACAACCACccaccgacaacaacaaatgcaacaataacgacaacaacaacaaacagcgctTCCGCCTACATCAACcataatagcagcagcaacagcagcagcaacaacaacaacaacagcaacaatcatataaatagccacaacaacaacagcagtttGAGTGTTGAGGatcagcagcaattgttgctacAGCAGCATcgtgcacagcagcaacaacaacaacagcagcagcagcagcagcaacatcatctgCTGAATGGCCGTCGCATTATCATTCAATCGACGGGCAACGGCGCCGGTTCCGTGATGGCTGCCAGCGACAtcaaggaggagcagcaggagctcgAGGATGAGCccgaggatgaggaggaggaggaagaggaagatCCAGAGCTTAACGATGAGAATCTGCAGGACATCGAAGAGGAGGCGCAGGCAGCCGAAGCTGATGAGGAGCCGGAAACGGCGACGCATTTGCAGCAACATCACcaccaacatcatcatcatcttcataatcagcagcagcagcagcagcaacatcatctgcttcagcagcagcaccatcatcaacaacagcaacatctacaacagcagcagcagcatcaacaacaacagcaacagcatttgcaAACGCAAgtcaagctggagctggacgaGCTGCCCGACgaagatgaggaggaggaggaggaggatgaggatgagcaaatgcaacagcagcagccagcgcagcagcagcagcagcagcagcaacaacaaattgagtcactgcagcagcaattggagTACTCAACAACGGCccagcagctggtgctgccAGCGGGCAGCATTGTGAGCACCACGACGCGCGCATTGGCAGTACCGGTGTCGGAGGCGGcgctggtgcagctgcagcggcgtcCCGTCTACATCAGCAATGCGACAATGAGCAGCCTGACGGGCGCCACCTATGTGCGAATgccggcagctgctgtcaTCAGTCGCAGTCCGATGACGGTGCTCAATGTGGTGCAGCAGACGGGCGGACCCACCGCACAGCTCATACTGCAAACGGCGCAGGCAACGCAGGCGGCGCCACAGCCAACGGCAAATGttacggcagcagcagcgccgtcgCCCAGCAACGAGCAACAGTTGGCGGCGATGGCActagcacaacaacagcagcaacagcagcaacaacagcagcagcaacagcagcagcaacagcagcaacaacagcagcaacaacagcagcaacaacagcagcagcaacatcagtcCATCAAGCCAGCGCCTGCCACAAGCAATGTGGCAACATCAACGACCAGCTATCAGTGCATGGAATGTGTGGAAAAGTTCGATTCGAAGGAGCTCTTCGACATCCATCGCAGCGGGCATGCCAACAACATGAAGTGCGCCATCTGCAACATGGTACTGAAATCGCTGAAGAACTATGAGAAGCACTGTTTACGCTGCAAGCCCTACGAGTGCCAAATCTGCGGCCGTGTTGTACGCTTTCGTCCCAACTTCATAAAGCATATGCGTGTGCATACGGGCCAGCAGTCGGAGCGGCACAAGTACAAGTGCGAGGTGTGCCACAAGGAGTTCATGAGCTTTGAGTACTTTAAGGTCCACAAGAAGATCCACAATGAGAACGTGAATCTCACCTGTGAGATTTGTGGCAAGGTGTTTAGCGCGTTGGCCTCGCTGCGCGGCCATTCGAAGCTCCACTCGGGCGTCAAGCTGCACAAATGCGACGTGTGTGGCAAGGGCTTTGGCCAGCGCTACAATCTGAAAATTcatgcacgcacgcacacgggCGACTTTCCCTTTGAGTGCAAGGTGTGCAAGAAGAAGCTGCATACGCAGTCGTCGCTGCAGACGCATATGCAGGTGCATTTGCGTGATCAGCCCAAAGGcggcgctgccagcagcagcagcagcagcggcggcggcggcggcggcagcaacaacaacaataataatattaataacaatgctgtgacagcagcaacagccaatgTTAAGCTGGAACCCGAACTGGAgcaggccagcagcagcctgcagcaacagcagcagcagcagcagcaacatcatctgcaacagcaacagcacgaaATGGACCTGGACGATCAGTCCGGGCTGAGCGATGAGGAGACGGAGAGCGCTGTTCACAATTTGACCAATAATCGTTTAACCACCGGCGAGGACTCCTCCAATGAGTCCTCATCGAATGCCTCGCTACAGCAGCCGCACTCCTCAGCCAGCTCaacgcactcgcactcacagcagcagcaacaacaacaacagcagcagcaacagcagcaacatcaacaacagcaatatatTGTATCGACACCCACGCGCACCATTGTCATTAAAAACtatatgcaacagcagcaacagcaacagcagcagcagcaacagcagtcggATAATCCAACcggcaatggcagctgctCGAGCGTGCTGCACACACAGGTCATACAGAGCGGTGCAGGCACCAGCAACGGCCATCACATCATCAACGCCACcagcaatgccaacagcaacagccacgcgaacagcaatggcaacagcagcagcagcaacagcaacagtagcaacaacaacggcagcagcaacagcacagccagcagcggcggcagcggcaatgtTGCAACTGCGGCCAGCAATCTGGcacagcaactgttgcgcAAAACGCCGATCATCCATTCGACGGGCACGCTCAGCTCAGCGCTGGCCAGCGTGGTGCAGCAGACGGGCGTTGGTTCGCCGGCGCAATCGCCGTCATCTTCATCCACATCGTGTTCCTCCACCGTGCTGGTGTCCAAGGCGACGGGGGTGCCCCTGTCTATAGCCTCATCTGCGGCACTGGGCGGCTCCACAATAATACGCAGCACGCGcaatcatcaacagcagcaacaacagcagcagcagcaacagcagcagcagcaggcaacgagcaattgtagcagcagcagcaatgtgcGTGTTGTAGCtggacagcaacagccgcgTAATAACCACCGAAACCACCACCGACGTCGTCATCTGGCGGATAtggacgatgatgatgatgatgatgataataatgaSGAGGATGAGACGAGCGTGCAGTTGCGCGCAGCCACCAAtggacatcatcatcatcatcatcagcaacaacaacaacaacaccaacaacaacaacaacaacagcagcagctaaatcaCAATCATAATCACAACCACCAACAACATAATCACCAACAGccgcatcatcagcaacaacagcagcagcagcaacatcatcataaCCATCAGCATCACAATCAtttcgatgatgatgatgatgatgagaaaTCCTCACCGTCCTTGGCCACAGCGGCCATTATCAAAGTGGAACCGAATCTCTATTCATCCGGCTCTGGCGATAATTCCAACGATATGTTCATCAAAGAGGAAGTGATGTTCGAGGATTCCGCCGCACCACACTCGCCCCAATCGCCGCCCAGTTCCAAGTTTCGCATATCGAATTTCGAGAATGATTTGGTCGACCATCATGTGGACCTGAGTCATTCGCTGCCGCCATATGGCAATCTGTTCGAACCGCACTCCATACCCGACAGCATACCCGTGCAGCTCTATCcggacgacgacgatgacttTCGGCTGGATCACAGCTCGCTGGGCGGCCTGCACAATACGTCGTCCTCGACGACCGACGGCGACTTCATCAAAAAGGAATGGGTCTATGGCAGCGGCACGAGCAGCTATGCGATGAACGGCAAGTTCGACGATGACAGTGATGCCCTCTGCGATGCGGCcaactttatatacaattga
Protein Sequence
MASSSSSATNAVSSNATALPSLFAGSNNNNSSSSNNNSSGCAAAVNVAAKDMDGLIAINDSALSQQIEFILQDAPMEQDDEQQQLQLQQQLNMAAAAATAAAAAAAAASKLDNHPPTTTNATITTTTTNSASAYINHNSSSNSSSNNNNNSNNHINSHNNNSSLSVEDQQQLLLQQHRAQQQQQQQQQQQQQHHLLNGRRIIIQSTGNGAGSVMAASDIKEEQQELEDEPEDEEEEEEEDPELNDENLQDIEEEAQAAEADEEPETATHLQQHHHQHHHHLHNQQQQQQQHHLLQQQHHHQQQQHLQQQQQHQQQQQQHLQTQVKLELDELPDEDEEEEEEDEDEQMQQQQPAQQQQQQQQQQIESLQQQLEYSTTAQQLVLPAGSIVSTTTRALAVPVSEAALVQLQRRPVYISNATMSSLTGATYVRMPAAAVISRSPMTVLNVVQQTGGPTAQLILQTAQATQAAPQPTANVTAAAAPSPSNEQQLAAMALAQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQSIKPAPATSNVATSTTSYQCMECVEKFDSKELFDIHRSGHANNMKCAICNMVLKSLKNYEKHCLRCKPYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKIHNENVNLTCEICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHTGDFPFECKVCKKKLHTQSSLQTHMQVHLRDQPKGGAASSSSSSGGGGGGSNNNNNNINNNAVTAATANVKLEPELEQASSSLQQQQQQQQQHHLQQQQHEMDLDDQSGLSDEETESAVHNLTNNRLTTGEDSSNESSSNASLQQPHSSASSTHSHSQQQQQQQQQQQQQQHQQQQYIVSTPTRTIVIKNYMQQQQQQQQQQQQQSDNPTGNGSCSSVLHTQVIQSGAGTSNGHHIINATSNANSNSHANSNGNSSSSNSNSSNNNGSSNSTASSGGSGNVATAASNLAQQLLRKTPIIHSTGTLSSALASVVQQTGVGSPAQSPSSSSTSCSSTVLVSKATGVPLSIASSAALGGSTIIRSTRNHQQQQQQQQQQQQQQQATSNCSSSSNVRVVAGQQQPRNNHRNHHRRRHLADMDDDDDDDDNNXEDETSVQLRAATNGHHHHHHQQQQQQHQQQQQQQQQLNHNHNHNHQQHNHQQPHHQQQQQQQQHHHNHQHHNHFDDDDDDEKSSPSLATAAIIKVEPNLYSSGSGDNSNDMFIKEEVMFEDSAAPHSPQSPPSSKFRISNFENDLVDHHVDLSHSLPPYGNLFEPHSIPDSIPVQLYPDDDDDFRLDHSSLGGLHNTSSSTTDGDFIKKEWVYGSGTSSYAMNGKFDDDSDALCDAANFIYN