Dari009418.1
Basic Information
- Insect
- Drosophila arizonae
- Gene Symbol
- -
- Assembly
- GCA_001654025.1
- Location
- NW:9368246-9371677[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.05 2.8 8.0 2.1 1 23 161 183 161 183 0.97 2 17 4.9e-05 0.0027 17.5 1.6 1 23 188 213 188 213 0.97 3 17 5.4e-05 0.0031 17.3 2.9 1 23 222 244 222 244 0.97 4 17 1.5e-06 8.6e-05 22.2 0.2 1 23 252 276 252 276 0.98 5 17 0.024 1.3 9.0 2.6 1 23 282 304 282 304 0.97 6 17 2.3e-05 0.0013 18.5 4.6 1 23 310 333 310 333 0.97 7 17 0.00028 0.016 15.1 0.5 1 23 341 363 341 363 0.95 8 17 6e-07 3.4e-05 23.5 2.9 1 23 369 391 369 391 0.98 9 17 1.7e-05 0.00093 19.0 1.6 2 23 607 628 606 628 0.97 10 17 0.00029 0.016 15.0 0.6 1 23 634 658 634 658 0.97 11 17 0.00011 0.0063 16.4 3.1 1 23 664 689 664 689 0.96 12 17 2.7e-05 0.0015 18.3 1.6 1 23 698 720 698 720 0.97 13 17 0.001 0.057 13.3 2.8 2 23 729 752 728 752 0.92 14 17 0.0004 0.022 14.6 1.1 1 23 758 780 758 780 0.97 15 17 0.00099 0.055 13.4 0.9 2 23 787 809 786 809 0.94 16 17 0.0038 0.21 11.6 1.1 1 23 815 837 815 837 0.97 17 17 1.2e-07 7e-06 25.7 0.3 1 23 843 865 843 865 0.98
Sequence Information
- Coding Sequence
- ATGTCCAATTCGTCCAAGTGCCGTGTGTGCACTTGCTCTCTCGATGCAGCTGCGGTATGCTATGATATGCGCAAGTTGCCCAAGCTGGCGCACAAGTTCGTCACTTGCACGGATTTGTCCGTGTCCGATGAGACGCGGTTGCCCAGCGAGCTGTGCCGCGCCTGCCGTGACCAACTGGAACGTTTGTATGCATTTCGGGCTAAGTGCATAGCAGCCGACACGAAATGGCGCATGGAATTACTAGCATTTTGCGCCGATGATGAGCAGCAAGCTGAGACTGTTGAGGCAACAAGTCCTGACCAGGAGCGTAGTCAGTCGAGAGTAGAAGCAGAGGAAAGTCAGGCTGATAAACTGATGGCaacagctgaagcagaagccgCGGCGGAGGAGACAAAAATAGACGAagctcaacaacaaaagtcaGTCGGATCGGAACAGGCTTCCGAACAGAGCTCCTTGGTTAAGCCACCCAAGTCCATATACAAATGCGACATCTGCGATACACAGTTCCTTGAGGAGCATCGCCTGCAAGCACACAAACGCCAGCATGGACTTATGCCCTATCCCTGCCCGGAGCCGGGCTGTGACCGAGGCTACAGCCACAAGAATACGCTTAGCGTGCACATGCGCAAGTGCCACAAGTTGGGCAAGGAGCACAAGTCGCACGTTTGCGAATACTGTGGCAARACGTTCGACACACTGTGGCGCCTTAAGAATCATCGCTTCACCCACAAGGACAAGTCGGAGCTGCCGTACGTTTGCGAGGATGCGGACTGTGGCCAACGCTTCTCCAGCAAGCAGCTGCTTAAGGTGCATATGATGCGCCATGCGGGCATCAAGAACTACAGCTGCACCCACTGCGGCGTGCAGAAGACGACGCGCACTGAGCTCAAGATTCATCTCAACTATCATACGCTTGAGCGCACCTATTGCTGTCGCATCTGCTCGAAGGTKTGCAACAGCTCCAGCAATCTCAACCTACACATGCGCAGCGTGCACGAGCGTGATCGTGCTCGCTCCTTTGCTTGTAGGTACTGCGGTCGCACCTTCACACAGCCTGTCCTACGCAAGCAACACGAGCTGATCCACACCGGCGAGAAGCCACACGAGTGCCCAGAGTGTGGACGACATTTCAGACAAAAGGGCGCTCTACGCACACATCGGAGAATACATAAGCGGGAGAGCACCGAATCCAGTGAGAAAGTAGCAACATCTCCGAGTGAGACAGCTTCGGGAAACTGTATTAAAAATGTGTCAGAAAGTATGGCACCTGATTATACTAATTCTTTTGCAAACCTGATATATCACGTCTTCGAGAGAGCGAACACTTCTGTTACTCTCACCATCTTGCTCATCTCTATCGCCTTCACAGCTCCTATGACGTCAGCAATTCCGTCAACAAAGTGCCGCGTTTGCATTTGTGCACTCGACGCAGCTGTGTGCAGCTATGATATGCGACAGTTGCCCGACTTGGCGCACAAATTCGCGACCTTGACAGATTTATCACTCTCCCAGTCGGAGtctgagcaacagcaacaactgccaaGTGAGCTGTGCCAAGTTTGCTTTGAGCAGTTGGAGGAGTCGTATGCATTTCGTAGCAAATGCATAGCAGCCGATGCACAATGGCGCTTAGAATTATCTTCAAATATCCCTTCAGAGGATATAGAGAAGAATCCGGGCACAACAGAAGCACTGCATGAATTGGCCAATGAAGAGACTGAAATAGAATTACCCCAAGTAGAATCTGCCGTTGAGAATGCAATAGTAGCTGTAGAAATAAGTGGAGCACAGGAATTGTCATCTAAGGATTTAGATTCGTGCAACGTTTGTGGCATGCGTTTCTCGACGCAGCATCGCTTGATCGCCCACCAGCGTCAACACAAAGGCCTGGCGCCTTATCCCTGCACAGAGGAGGGCTGTGATCGAGCATTTAAACGTTATCATGGCCTGTCGGAGCACCTGAAGGAGCACTTGGTCACCAGCCGCTTCAGCTGTGAGCAGGAGGGCTGCGATAAGGTCTATCGGCATAAGCCCACGTTAATCATGCACATGCGCAGGTGCCACAAGCTGGGCCCGGAGCTGAAGTCCCATGTATGCGAGTTCTGTGGCAAGGTCTTCAATTCCAGTTCGGTGCTCAACGATCATCGCTACACGCACAAAGACCAGTCCGAACTGCCGCACGCCTGCCAGGAGACGAACTGTTCGCGACGCTTCTCCAGCAAAGAGAAGCTGAAAGTGCATCTGATGCGCCATGCGGGTATCAAGAACTTCAGCTGCCCCTATTGCGGCATGCGGAAGACTACGAGAAACGAGCTGAAGATCCATATGAACTATCACACGCTGGAGCGCACCTGGCCCTGTCGCTTCTGCTCAAAGGTGTGCAACAGCTCCGGCAATCTGAAGATGCATGTCCGTGCAGTGCATGAGCGTGCGCGGGACTACGCCTGTAGCTACTGCGAGCGCCGGTTCGCCAAGGCAGACACCCGCAAATACCACGAGATGACGCACACCGGAGAGAAGCCCTTCGAGTGCGAGGAATGCGGCAAGCGTTTCACACAGCCCGCAGCTCTACGCACCCATCGCAAGATCCATGAGCGACAGCGCACGGACTCTAACACCATAACGTATACGCTCTTGCTGACAGCGCCAAGTGACACAAATGCCGCTGGTGTGGAGCAGGCGAATGAATGCAGTTAA
- Protein Sequence
- MSNSSKCRVCTCSLDAAAVCYDMRKLPKLAHKFVTCTDLSVSDETRLPSELCRACRDQLERLYAFRAKCIAADTKWRMELLAFCADDEQQAETVEATSPDQERSQSRVEAEESQADKLMATAEAEAAAEETKIDEAQQQKSVGSEQASEQSSLVKPPKSIYKCDICDTQFLEEHRLQAHKRQHGLMPYPCPEPGCDRGYSHKNTLSVHMRKCHKLGKEHKSHVCEYCGKTFDTLWRLKNHRFTHKDKSELPYVCEDADCGQRFSSKQLLKVHMMRHAGIKNYSCTHCGVQKTTRTELKIHLNYHTLERTYCCRICSKVCNSSSNLNLHMRSVHERDRARSFACRYCGRTFTQPVLRKQHELIHTGEKPHECPECGRHFRQKGALRTHRRIHKRESTESSEKVATSPSETASGNCIKNVSESMAPDYTNSFANLIYHVFERANTSVTLTILLISIAFTAPMTSAIPSTKCRVCICALDAAVCSYDMRQLPDLAHKFATLTDLSLSQSESEQQQQLPSELCQVCFEQLEESYAFRSKCIAADAQWRLELSSNIPSEDIEKNPGTTEALHELANEETEIELPQVESAVENAIVAVEISGAQELSSKDLDSCNVCGMRFSTQHRLIAHQRQHKGLAPYPCTEEGCDRAFKRYHGLSEHLKEHLVTSRFSCEQEGCDKVYRHKPTLIMHMRRCHKLGPELKSHVCEFCGKVFNSSSVLNDHRYTHKDQSELPHACQETNCSRRFSSKEKLKVHLMRHAGIKNFSCPYCGMRKTTRNELKIHMNYHTLERTWPCRFCSKVCNSSGNLKMHVRAVHERARDYACSYCERRFAKADTRKYHEMTHTGEKPFECEECGKRFTQPAALRTHRKIHERQRTDSNTITYTLLLTAPSDTNAAGVEQANECS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -