Basic Information

Insect: Drosophila arawakana
Gene Symbol: -
Assembly: GCA_018151165.1
Location: JAECWX010000203.1:477417-479513[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.2 71 4.0 0.2 1 12 39 50 39 55 0.83

2 10 0.0021 0.12 12.7 5.6 2 23 209 230 208 230 0.97

3 10 0.00049 0.028 14.7 1.2 1 23 256 277 256 277 0.97

4 10 0.00046 0.027 14.8 1.0 1 23 283 305 283 305 0.98

5 10 0.00048 0.028 14.7 0.8 1 23 336 358 336 358 0.97

6 10 8.9e-08 5.1e-06 26.5 0.9 1 23 364 386 364 386 0.99

7 10 0.0033 0.19 12.1 6.5 1 23 392 414 392 414 0.98

8 10 8.5e-06 0.00049 20.2 0.7 1 23 420 442 420 442 0.98

9 10 2.9e-05 0.0017 18.6 0.0 1 23 446 468 446 468 0.99

10 10 0.0065 0.38 11.2 0.0 3 23 492 513 490 513 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.2	71	4.0	0.2	1	12	39	50	39	55	0.83
2	10	0.0021	0.12	12.7	5.6	2	23	209	230	208	230	0.97
3	10	0.00049	0.028	14.7	1.2	1	23	256	277	256	277	0.97
4	10	0.00046	0.027	14.8	1.0	1	23	283	305	283	305	0.98
5	10	0.00048	0.028	14.7	0.8	1	23	336	358	336	358	0.97
6	10	8.9e-08	5.1e-06	26.5	0.9	1	23	364	386	364	386	0.99
7	10	0.0033	0.19	12.1	6.5	1	23	392	414	392	414	0.98
8	10	8.5e-06	0.00049	20.2	0.7	1	23	420	442	420	442	0.98
9	10	2.9e-05	0.0017	18.6	0.0	1	23	446	468	446	468	0.99
10	10	0.0065	0.38	11.2	0.0	3	23	492	513	490	513	0.95

Sequence Information

Coding Sequence: ATGCCAGGTTGCAGTGGAAAAAACTCAGAGACAACAACGCTGCAGTCGCACGTGGAGGTGAAAAAACAAAGCAATGTTGATCACTTTATTATTGATCCGTGCTCGGACGAGCTCTACTACTGTGAAGATTGTGGCAACGACTTTGATAGCATTGAGGCGTACAACGAATCTCACAGTGGTCTCGACGGTTGTGTGGGTGCTGCCGAAGCCAGATCCGAAATCGCAGTTCACGCCATAGAGATAAAAGATGAACCATTTCTGGATGACGACACAGTTGATGACCATGAATCCATGGTCATGGAGGAAGATATAATTGAGGAAATAGATGACGATGTCAGCGAGCCACAGCTTTGGGAAGTGTTGGACGATAGCACAACGCTGCCCACAACTGAAGCTGAAGCGGATCTCGAAGCACCCGAAGCTGATGAGAGTCCCAGCAAGTCGGAACGCTACTTTTGCTTCGACTGCCATAGCATATTCGAGACACGGCAATGCGCCGAAGAGCACAGCTGTCCAAATGCTGAACCCAACTCAAAAAGTAACGCTAAATTCGCCAAAACACATACGCCAATTCGTCGTAAATTGCCAGTTAATTCGGCAAGCGATGGCAAAAGCACGAGCACAGTTTGTCACATCTGCAAAACGACATTCAGTTCTGCCAAATGCCTCAAGTTCCACATGCGCATACACAACAAACGCGCCTCCAAGTCAATCCAGGATGCGCTACCCGTGGGAGCGCATCAGCAGTACAGCGAACTCGATCAGTTCTACTGCGAGATCTGCAACAAAAGCTTCGAGCAGAATCTTTTGACTGTGCACAAACAGATGCATCAGAGTCAGCAGCAGTTCTCCTGCGGCACATGCAATCGCAAGTTTGATAACGTAACCAACTACGAGATGCATCTCAAGATTCACGAGCGTCAGACCACAAAAAACAATTACAACAACAACAACAAAAGCAACGAGAGTGCCAAGAAGACAGCGAGCGGCAAGGATAAGCCAGGATTCGCCTGCCAGTACTGTCAGCGCGTGTTCCAGCGACCATACGAGAAGGTGAAGCACGAGCGAGTCCACACTGGAGAAAAACCCTACAGCTGCGAGGTCTGCGGGAAAACCTTCCGAGTGTCCTATTCCCTCACACTGCATTTGCGCACACACACAAACATACGCCCCTATGTGTGCACCACCTGCAATAAGCGCTTTAAATCGCATCAGGTTTACTCGCATCACCTTCGCATTCACAGCACGGAGCGTCAATACGCCTGTGATAGTTGTCCAAAGACCTTCCGCACTTCAGTGCAGCTTTATGCCCACAAGAACACGCACACAAAGCCGTATCAGTGCGCTGTCTGCAATCGACCCTTTGCCTCTTTGTATGCTGTCAAGGCTCACATGGCTACACACCGTACCGGCGACGCCAAGAGCATCACCAGTGCGGCAATCAGGAGTCAGCAGCTGTCCAACAAATACTGGTGCGTCACTTGTGGTGCGGAGTACGCTCGCCCCTTTGCGCTGCGCCTGCATATGAAAGCCGCCCACGGACATCCAGATGATGCAGATACTCGGCTACCCAATGTGGCTGAAACGGACAGTGACGAAATAATCGTGCCGGATACAGAGACAGCGGTACTCATTGCAGCTGCCAAAGCGGACTCTGCCTATTTGAATGCAACCAATGATGATGATTTGGACGTCTCCGATCCCAAGTACGAAGAATGCGTTGAAGTGTCTACAGACGCGTTTGATGTGGAAACCTTCCACAGCGAGGAAATCATCACAGACTGGCTGAAGTGA
Protein Sequence: MPGCSGKNSETTTLQSHVEVKKQSNVDHFIIDPCSDELYYCEDCGNDFDSIEAYNESHSGLDGCVGAAEARSEIAVHAIEIKDEPFLDDDTVDDHESMVMEEDIIEEIDDDVSEPQLWEVLDDSTTLPTTEAEADLEAPEADESPSKSERYFCFDCHSIFETRQCAEEHSCPNAEPNSKSNAKFAKTHTPIRRKLPVNSASDGKSTSTVCHICKTTFSSAKCLKFHMRIHNKRASKSIQDALPVGAHQQYSELDQFYCEICNKSFEQNLLTVHKQMHQSQQQFSCGTCNRKFDNVTNYEMHLKIHERQTTKNNYNNNNKSNESAKKTASGKDKPGFACQYCQRVFQRPYEKVKHERVHTGEKPYSCEVCGKTFRVSYSLTLHLRTHTNIRPYVCTTCNKRFKSHQVYSHHLRIHSTERQYACDSCPKTFRTSVQLYAHKNTHTKPYQCAVCNRPFASLYAVKAHMATHRTGDAKSITSAAIRSQQLSNKYWCVTCGAEYARPFALRLHMKAAHGHPDDADTRLPNVAETDSDEIIVPDTETAVLIAAAKADSAYLNATNDDDLDVSDPKYEECVEVSTDAFDVETFHSEEIITDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00610829;
90% Identity: iTF_00471047; iTF_00569151;
80% Identity: -