Dara004866.1
Basic Information
- Insect
- Drosophila arawakana
- Gene Symbol
- hang
- Assembly
- GCA_018151165.1
- Location
- JAECWX010000635.1:5755293-5771236[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.16 9.1 6.8 1.0 3 23 200 221 199 221 0.93 2 13 0.12 6.7 7.2 3.5 3 22 328 347 326 347 0.89 3 13 0.00034 0.02 15.2 3.3 1 22 453 474 453 476 0.90 4 13 0.039 2.3 8.7 0.1 2 21 488 507 487 508 0.93 5 13 0.00039 0.023 15.0 0.2 2 23 626 648 625 648 0.95 6 13 0.0011 0.065 13.6 0.1 1 23 656 679 656 679 0.96 7 13 0.00016 0.0094 16.2 2.9 2 23 746 768 745 768 0.97 8 13 0.013 0.74 10.2 0.2 2 23 777 799 776 799 0.95 9 13 0.00068 0.039 14.3 0.1 1 23 812 835 812 835 0.97 10 13 7.1e-05 0.0041 17.3 1.1 1 23 895 917 895 917 0.99 11 13 0.0011 0.063 13.6 0.9 1 23 925 948 925 948 0.96 12 13 1.5e-05 0.00086 19.5 0.4 3 23 958 978 957 978 0.98 13 13 0.0029 0.16 12.3 0.1 1 23 1013 1035 1013 1035 0.97
Sequence Information
- Coding Sequence
- ATGCCCGACAATGACGGCGGCGACAACGACGACGCGACGGCCATCGCCATTTATTGTCCAGTGAATCCCTTTGCCGTAAATCCCCTCATGCCAGAGGCTATCACACCACTGGATCGCCTGTCGCTGTACATCTGCCACGCCTGCATCAGTTACTTGAACTCTTGGCAGAGTTTCAAAAATCGCTGCTTGAGCTCACAAACAAAGCAGCGTCAATGGCTGGAGACGGAGGGCAGCAAGCAGCAAACATTATTGGGCTATTTGGATTTAAATCGGGCCGAGAATGGCAGCACAACACATGCCGAGCAACAGCAGCAATCCGATTTAAAAAATGATCCGCTGCCCGCTGTGCCCATCAAGGATGAGCCACTCGATGACACGGACGATGACTTTCAGATGAAGTGCATTGATGAGTCCGATGACATGATGGACCCCACTATGTTCCTAGAGCGCTCCGAGCACGAGGGCGATGTGCCACTAATGACCGCCGACTACGACTACACGGCGCAGCACGGCGTAACAGCTGCGGTGGCAGCCGCCTCGCTGCCTCCGACCGCAGTGGCCAATGTGGCCGCCGCTGGAGACTCCAAAGTGGCCAGTTGCCGTGCTTGCAGTTTGCAGTTCTCCACACGCGCCAATGCCCGGCGACATGAGCGTAATCTGCATCCAAATCTATTTCAACTATCTACAGATTCACCCAACAATACGCCCATAACAAAACCGACACCAGCTCTTGCTGCAGCACTGGAAATACAACGTGCCGCTGCCGCAGCAGCAGCAACGGCAGAGGCCACCAAAGCGGCAGCAGGTGGTAATATATCGACACAAAAGTATCGACAGGTTGTGATGAATACGTTCATCAAGTGCGAGAACGGTGGCTATGACTACGAGCAACCGGAGCAGTATCAACAGCTACTGAGTCGCGACAAAGTCGAGTTCATACAGGAGAATAATGAATTTCTGGAACAGTATCAGACGATGACGTGTCGCTGCTGTAACAAGTTCTTTAGCACCTACAAGAACTTTATGGCACATGTGCGCAAGAAGTATCCAACGCTACCGCGTAATCTCTGCTTCAATTGCCTCAAAATGAACGACTCGAAGGCTTTGTTCATCTCGCATCTGAAGAAACGTAATTGCATCAATTTGTATCGTGTTTTGAATGCACTGCGTCTGAAGCAACCCAACTTTGCACATGCTACTTCGACGGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGAGAAACTACGCGCCAAGGAGTTGCTTGTAAATAAACTGTATGAGTGCAAATTGTGCCCGAAAGGATTTCGTACCAAGCACGAGTTTCGCACCCATGTGTACGATAAGCATGCGGATGTGCAGCGCAAGGATAACAACTCTATACAGTGTAGCTTCTGTGGCTTGGATTTCGCTGATCCCGTGGATCGACGACGTCATTACAATAACATGGATTGCATTGTGCGTCTGCGTTGCATGACCTGTGATGCCAAATTGGAGACACATCAGCGTTTCCTCGACCACGTCTATCAGGATCATTTGGGTGGTGTCAGCAGCGACAATGCCTCGACTACCGCAAACAGTGCACTCGATCAGCATTCGCCGGGCAAGCGTAGCTTATTGGGTGCTTTGGGCATTGGTGTCAGTCAATCATCGAATGATGAATCCCGCAGCAGTGGCAGTAACAATCATCCACTTACCTCTACACCCAAATTACCCGTGGCAAGCGTGGCAAGCGGCGGTACACCAGCAAGTCGCACTGAGGCACCCAAATCACAGTATTTCTCGCGTATGCCGCAGGTTTGTCCCATCTGTGGACAGCAGTACAACAACTACAACAATGTCTTGCGTCACATGGAATCGAAGCATCCCAATAAACTGCCAGAGACATATAAATGTGTTCGTTGTGGCTTAGGCTATCCACGCATTTCGTATCTACGCGAGCACATGATCAATGTCCATGGTGTGGACAAGAATCGTCATTCGGGTGGATTTGAGTACATTGTGAATGCGGATGCGGTGAAGCTGGCGGATGGCAGCACTCCAAATGTCTATACGGGACGCTATGACTATGTGATGAAGGATTTGATGTCCATAACAAATGGTGGGACACTCGATGACGACGATGAGGAAGCTGCCGATCGTCGCTTTCGTCGCATGCGTTGTCGCATTTGTCAGCGTCGTTTCAGTTCAAAGAAATCGTATCGTTATCACATGTTAACCGACCATCAGGTGCAGAATGTGCAGTTTATTAAATGTAAACTATGCAATGCTGAATTTGCCTACGAGAAGGGTTTGAAGGTGCATTTGTTCAAGGTGCATGGACGTGCCATCAAGGATGAAATGATAATTAAGCAATTTGAATGTGATATCTGTTCGATAGTCTACAGTTCGGAATTGGAATTGCAGCAGCACAAACGTAGTGTGCACAAATCATCAGCAGCTGCAACATCAACAGCAACCACAACATTAAAATCATCGACAACAGCTACAGCTACCTCTGGCTCGGCTTCTGCCTCGGCCTCGGCCTCGGCCTCTGTCTCTGCCTCGGCAGCTGAACTGGCCGATATATCGGGCAGCGCTTCAGCCGTCTTGCCGCTGTATTGGTACCAGTGCAAGTACTGTCCATCCAATTTCAATACAAACAAGAAACTTGCCATACACATCAATTCGCATGATGAGTTCGATTCGAATGATTATTCGTGCAAGGATTGCGGCAATGTCTACAGTGGTCGCAAGAGTCTTTGGGTGCATCGTTACAAGAAGCATCCGCAGATACGCATACCCGAAGTGGCATGCACCATTTGTGGTGCCAGATTCACCGATCAGGAAATGTTCACCAAACACATACAGAAACATGAACAGGAATTGTATGTGGACAATCCATTGGCAGCAATGTTCGATGATGGACCCGCTGATGCGGGACAATTTCAGGTGGAGCGACAGAACGAGAATGGGGAATATGCATGCGATTTGTGTGCCAAGACATTCCCACAGGTGATCGCACTCAAGGTGCATCGCAAATGGCATTTCAGAGGTGATAGCAAGCAGGCGGACATCTTCCTTGGACGAGCAAATTAG
- Protein Sequence
- MPDNDGGDNDDATAIAIYCPVNPFAVNPLMPEAITPLDRLSLYICHACISYLNSWQSFKNRCLSSQTKQRQWLETEGSKQQTLLGYLDLNRAENGSTTHAEQQQQSDLKNDPLPAVPIKDEPLDDTDDDFQMKCIDESDDMMDPTMFLERSEHEGDVPLMTADYDYTAQHGVTAAVAAASLPPTAVANVAAAGDSKVASCRACSLQFSTRANARRHERNLHPNLFQLSTDSPNNTPITKPTPALAAALEIQRAAAAAAATAEATKAAAGGNISTQKYRQVVMNTFIKCENGGYDYEQPEQYQQLLSRDKVEFIQENNEFLEQYQTMTCRCCNKFFSTYKNFMAHVRKKYPTLPRNLCFNCLKMNDSKALFISHLKKRNCINLYRVLNALRLKQPNFAHATSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKLRAKELLVNKLYECKLCPKGFRTKHEFRTHVYDKHADVQRKDNNSIQCSFCGLDFADPVDRRRHYNNMDCIVRLRCMTCDAKLETHQRFLDHVYQDHLGGVSSDNASTTANSALDQHSPGKRSLLGALGIGVSQSSNDESRSSGSNNHPLTSTPKLPVASVASGGTPASRTEAPKSQYFSRMPQVCPICGQQYNNYNNVLRHMESKHPNKLPETYKCVRCGLGYPRISYLREHMINVHGVDKNRHSGGFEYIVNADAVKLADGSTPNVYTGRYDYVMKDLMSITNGGTLDDDDEEAADRRFRRMRCRICQRRFSSKKSYRYHMLTDHQVQNVQFIKCKLCNAEFAYEKGLKVHLFKVHGRAIKDEMIIKQFECDICSIVYSSELELQQHKRSVHKSSAAATSTATTTLKSSTTATATSGSASASASASASVSASAAELADISGSASAVLPLYWYQCKYCPSNFNTNKKLAIHINSHDEFDSNDYSCKDCGNVYSGRKSLWVHRYKKHPQIRIPEVACTICGARFTDQEMFTKHIQKHEQELYVDNPLAAMFDDGPADAGQFQVERQNENGEYACDLCAKTFPQVIALKVHRKWHFRGDSKQADIFLGRAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -