Basic Information

Insect: Drosophila arawakana
Gene Symbol: -
Assembly: GCA_018151165.1
Location: JAECWX010000239.1:3862109-3864384[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.42 24 5.5 0.0 10 23 246 259 243 259 0.93

2 12 6.7e-05 0.0039 17.4 2.1 1 23 320 342 320 342 0.99

3 12 2.8e-06 0.00016 21.8 2.3 1 23 348 370 348 370 0.99

4 12 1.3e-05 0.00076 19.6 6.0 1 23 397 420 397 420 0.95

5 12 2.2e-05 0.0013 19.0 2.0 1 23 426 448 426 448 0.99

6 12 3.1e-05 0.0018 18.5 0.8 1 23 454 476 454 476 0.92

7 12 0.00078 0.045 14.1 2.9 1 23 482 504 482 504 0.97

8 12 0.22 13 6.4 2.2 1 15 510 524 510 534 0.85

9 12 9.4e-05 0.0054 17.0 0.6 1 23 540 562 540 562 0.98

10 12 1.2e-06 7e-05 22.9 1.9 1 23 568 590 568 590 0.99

11 12 0.00084 0.048 14.0 2.3 1 23 596 618 596 618 0.96

12 12 0.053 3 8.3 0.3 1 13 624 636 624 641 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.42	24	5.5	0.0	10	23	246	259	243	259	0.93
2	12	6.7e-05	0.0039	17.4	2.1	1	23	320	342	320	342	0.99
3	12	2.8e-06	0.00016	21.8	2.3	1	23	348	370	348	370	0.99
4	12	1.3e-05	0.00076	19.6	6.0	1	23	397	420	397	420	0.95
5	12	2.2e-05	0.0013	19.0	2.0	1	23	426	448	426	448	0.99
6	12	3.1e-05	0.0018	18.5	0.8	1	23	454	476	454	476	0.92
7	12	0.00078	0.045	14.1	2.9	1	23	482	504	482	504	0.97
8	12	0.22	13	6.4	2.2	1	15	510	524	510	534	0.85
9	12	9.4e-05	0.0054	17.0	0.6	1	23	540	562	540	562	0.98
10	12	1.2e-06	7e-05	22.9	1.9	1	23	568	590	568	590	0.99
11	12	0.00084	0.048	14.0	2.3	1	23	596	618	596	618	0.96
12	12	0.053	3	8.3	0.3	1	13	624	636	624	641	0.89

Sequence Information

Coding Sequence: ATGGACGAATTATGCCGCTTTTGCACAATGCCCTGCTCCACATTTGAGAATATATTCACCGAGCGGGACCAAACGGACAGCCAACCCAACCTTGTTGAAATACTGGAGTATTGTACAGACAGAGAAATCAAGGACACGGACTTGTTACCTCAAAACATATGTGGGCCTTGCATGTCGGCTGCCATCAATGCATTTGAATTCAAACTTCGATGCGAACAAAGCGAAACATATTTTAAGGAACTCTTGAACGAATGTGAAAAGCCTAAAGTCAAATGTGAAATGAGTAAAGTTTGTCGCTTCTGCACACTAAACTATGTAGCGCTTGAGAAAATATTCCCGGAGCGAGAAAAGACTGATGATAACAATTTGCTCATCGGCGTGCTGCAATTCTGTACAAACTGTGACATAAGCGAACTAGATGCATTGCCTAAAAATATATGCGGTCCCTGCATAGCAGAGGCGAGAAATGCATTTGAATTTAAACTAAAAAGCGAACAAAGCGAAACGTACCTTAAGGAACTGCTCAGTGATCGTGAGCAGAAACCCAACACTGATGAACTCACCACAGGCGAGTGGGGAATTACAGAGTGCGTTTTTGAAGAGCACGGTATTGAATTAGATCTTGAGGAATTTAATGAGTTTGTGGCAGAAGATAACGACGCGGAAAGCGATACATACAGAGTTAGCTCACGAAGGAATGAAAATTTATGGCTGTGCCAGCTGCAAGGAATACTTTTCACAACAAAGGAACTGCTGAAGGAGCATCAGATAGTACACCAAGAGCATAAAGAAGAGCACCAGGAACAACAACAGCAAGAGCACAAGATGGAGCTCAACGAATTGCAGCAGGAAGAACAACAGGTAGAGCGCAACGCAGAGCACCAGGGAAAGCACCAGAAGGAGGACCAAGAGGAACACCAAAAGGAGCAACAAAAGAAACCTCTTCAAGAACGACGCTTCAAATGTGAGCAATGCTCGATGAGGTTTAAATACAATTACCTACTACAACTGCACCTCGAGACCCATTCGGACGAGCGTCCATACAAATGTGAGCTGTGTTCGAAAGCTTTCAAGACCAAGACCGGACTGAGAAGACACAAAGAGACCCATGCGCTGATAGGGGAACCCAAAGACAGGCCTCGATTAGAACTGTCAAATCACCTTTCTATTCATGCCGATGATCGTCCCCACAAGTGTGAAATCTGCGAAAAGACTTTTAAAAGGCATTATTCTCTGAAAGTACACATGCAGTTTAGCCATAACAAGGGGCGTAACTACAAGTGTGAGGCATGTCTGAAGGTGTATAGAACAAAATCCCAGCTAACTAGACACTCTAATACTCACAACGGAGATGTTAAATACAAGTGTGAGGCGTGTCCGAAGGCGTTTAGAACAAAAACCGAGCTTAATAGACACTCTTATGCTCACAGCGGTGAACGACGTTACCATTGTGAGAACTGTTTGAAGGCATTTGGATCGCGCTTTCAGCTTCAGAAGCACCAATACGTACACTCCGAGCATCGCCCCCACAAATGCGAGCAATGCTCGAGGATGTTTAAATCAAAGACCACTGAAGAACTGCATTTCCACACAGAGAGCCATGGGCAGGAACCAGCCTTCAAATGTCCCAACTGTCCGCAGGCTTTTCACAACGAAGCTGATTTGACGCAGCACAGCGAGACTCATGTGGTCATTCTTGAGTTCAAGTGTGATCAATGTCCAAAGATGTACAACACAAAGACGTTGTTAAACAGGCACATCAAGAGCCATAAAGACGAACGACTGTACAGCTGTGACGCCTGTTTCAAAGCTTTTAAAACAGTGCATGAGCTAAAACGGCATTTAATATTTCACGCCAGTGATCGGGACTTTAAGTGTACGCTTTGCCCCAAAGCGTATAAAACAAAACCAGGAGTTCAACAGACACCAAATCTCTCATTATTCCAATCTTTTTTATAA
Protein Sequence: MDELCRFCTMPCSTFENIFTERDQTDSQPNLVEILEYCTDREIKDTDLLPQNICGPCMSAAINAFEFKLRCEQSETYFKELLNECEKPKVKCEMSKVCRFCTLNYVALEKIFPEREKTDDNNLLIGVLQFCTNCDISELDALPKNICGPCIAEARNAFEFKLKSEQSETYLKELLSDREQKPNTDELTTGEWGITECVFEEHGIELDLEEFNEFVAEDNDAESDTYRVSSRRNENLWLCQLQGILFTTKELLKEHQIVHQEHKEEHQEQQQQEHKMELNELQQEEQQVERNAEHQGKHQKEDQEEHQKEQQKKPLQERRFKCEQCSMRFKYNYLLQLHLETHSDERPYKCELCSKAFKTKTGLRRHKETHALIGEPKDRPRLELSNHLSIHADDRPHKCEICEKTFKRHYSLKVHMQFSHNKGRNYKCEACLKVYRTKSQLTRHSNTHNGDVKYKCEACPKAFRTKTELNRHSYAHSGERRYHCENCLKAFGSRFQLQKHQYVHSEHRPHKCEQCSRMFKSKTTEELHFHTESHGQEPAFKCPNCPQAFHNEADLTQHSETHVVILEFKCDQCPKMYNTKTLLNRHIKSHKDERLYSCDACFKAFKTVHELKRHLIFHASDRDFKCTLCPKAYKTKPGVQQTPNLSLFQSFL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -