Dara004280.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila arawakana
Gene Symbol
retn
Assembly
GCA_018151165.1
Location
JAECWX010000203.1:2359962-2375269[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.8e-26 8.6e-23 80.4 0.0 2 89 375 460 374 460 0.96

Sequence Information

Coding Sequence
ATGCATAAAAAGCAAAGACCGGACCCAGCAGTACCCAGTAAAGGTAAAGTCACGGCTGGCAATAGTACGCTTGAAACGGTTTGTGGCCACGGATACGCCTTGGATGTGAGACTTTGGTATCGACCCTCGGATGGCCTACAGTACCTCAGTACGACAGTACGACAGTACGTGGCGTTGATGGCCTTTAATGGCCTGGACCAAAGTTGTGCTGCTTTGGTTCTGCCACAAAATTCCCACGGCGATCGAACGGATGACGAGATGAGGGACTGTGATTCGGTAGACGGGGAGCATCATCAGCTGAGTGCCAAGGCTGCGATTGCAGCTCGTCTTAGCCACACAGTCGCCGGCGGAGCTGGCCTCAATTTTGCCAGTCCAGAGCAGCAAACAGATCTGCCACTCAGCCATCACCATCAGTTGCCGCCGAATCATCCGCTAAATGCTCTTGGCAGCTTCATGGGCATCAGTGGACTACACAGCATTCCAAATCTACAGCACAGCGATGTACTCGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGTCTCATGGAACAGGACTATGCGGCAGCAGCACACGCAGCCGCCTTTGGAGCCAACATGTTGCCCACAACAATCAGTTCCGCCTTTCCACTGCCCCACAATTCGGTGGCAGCGGCAGCAGCAGCGGCGGCAGCGGCCTCCTTTGGCCCTGTGCCAACGGCTAGCAATGGCGGCGCTTACAATGGTGCCACAAGTGGAGGCAACAATGTTGGAGTAACTGCAACGGGAGCAGCTGTGGCAGGTAATAACAGCGCTGGAGGAGCAGCTGGCGGTGGAGGAGGAGCAGGAGCTGGTGGAGGAGGAGGTGGTGGCTTAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATCCCTTCTCATTTGCATCACCAACAGCGCCAAGCGCCAAAGAAGCACATCATTTTACAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCGCAGCAAAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTGTATGAAATCAATGATGATCCGAAGCGCAAGGAGTTTCTCGATGATTTGTTTTCATTTATGCAAAAGCGCGGCACGCCCATCAATCGGCTGCCCATAATGGCTAAATCAGTGCTGGATCTATATGAGCTATACAATTTGGTAATAGCACGCGGCGGTCTGGTCGATGTAATCAACAAGAAATTGTGGCAGGAGATCATCAAGGGACTGCATCTGCCATCGAGCATCACCAGTGCGGCATTCACGCTGCGCACCCAATACATGAAGTATCTTTACCCATACGAGTGCGAAAAGAAGAATCTCAGCACACCGGCTGAACTGCAGGCGGCCATCGATGGCAATCGCCGTGAAGGACGTCGCTCCAGCTATGGCCAATACGAGGCCATGCACAATCAGATGCCGCTGACGCCCATTTCACGGCCTACATTGCCGGGTGGCATGCAACAAATGTCGCCATTGGCGCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGATGGGTGGACCGGCTTTTGGCCAAATGCCCAATCTGATGACGCAGGAGATTGAGAATCGCATGATGGAGTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGAGCACGCGCGATGCGTTGAGTGCACAGGTGGCGCTGTGGCACATGTACCACAACAGCAGTCCCACTGGCTCGGCACACACCTCACCCCAGCAACGTGAAGCTTTGAACCTCTCGGACTCGCCACCGAATCTGAACTTGAGTCACATTAAGCGCGAACGTGAACGGGACCCAACACCAGAGCCAGCGGATCATGAGGACGCACCGCATCAACCGCCGCCAGCTAAACGTGTGGGCAGCGGTCTGATGCCACCAGGTTTTCCCGCTAACTTCTACTTGAATCCACACAATATGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACGCAGCGTCCGAGGGTGAACCGGATGATGATTATGGAAATACGGAGCACAATACCACAGGCAACTCGTCGTCCATGAACGATGACAATGAGCCACAGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGGCTATTGAGAACTCACCCAGCACTTCCACAACGGCCTCCGCATCTGGTGGCAATCGACACAGCTCGCCAGTGTCCACCAAGAAGAAGAATGGCAGCAGTAAAGCTCAATCGAGTTCCAAGGAGGCAACAGCAGCACACGACCATAACAACGTTGGTGGTGGTGGTGTTGGTGTCAAGCTAAATCCCCTCGAGACACTCAGTCTGCTCTCGGGCATGCAGTTTCAAGTGGCACGCAATGGCACCACCGAGAATGGAGAACAGCAGTTGATTGTCAACCTGGAGCTAAATGGCATTAAGTACTCCGGTGTCCTGGTGGCCAATGCAGTTGCACTCGCCACCGCTGCCGCCGCCGCCGCTGCCGAGTCAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGAGCCGAGGAGTCCGCGTCGGAGGAGGTCAAGCATGATAAAAGCATGGAAGTCAATAGTCAGAGCGAGACAGCTGATGAGGAAGCGGAGCAGACCATGGAGGACAACATTGTGAATGGTGTGGGCGGCAATGGGGTGGCGACTGTGGGCATAAACCAGCTTAAAGATGCTGTGGTCAGTTCGTAA
Protein Sequence
MHKKQRPDPAVPSKGKVTAGNSTLETVCGHGYALDVRLWYRPSDGLQYLSTTVRQYVALMAFNGLDQSCAALVLPQNSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGAGLNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGISGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTISSAFPLPHNSVAAAAAAAAAASFGPVPTASNGGAYNGATSGGNNVGVTATGAAVAGNNSAGGAAGGGGGAGAGGGGGGGLNXXXXXXXXXXXXXXXXXXXXXXXXHPFSFASPTAPSAKEAHHFTANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPLTPISRPTLPGGMQQMSPLALVXXXXXXXXXXXXXXXXXXXXXXXLMGGPAFGQMPNLMTQEIENRMMEYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPNLNLSHIKRERERDPTPEPADHEDAPHQPPPAKRVGSGLMPPGFPANFYLNPHNMAXXXXXXXXXXXXXXXXXXXXDAASEGEPDDDYGNTEHNTTGNSSSMNDDNEPQQXXXXXXXXXXXXXXXXXXXXXXXSAIENSPSTSTTASASGGNRHSSPVSTKKKNGSSKAQSSSKEATAAHDHNNVGGGGVGVKLNPLETLSLLSGMQFQVARNGTTENGEQQLIVNLELNGIKYSGVLVANAVALATAAAAAAAESRXXXXXXXXXXXXXXXXXXXXXXXXXRAEESASEEVKHDKSMEVNSQSETADEEAEQTMEDNIVNGVGGNGVATVGINQLKDAVVSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-