Basic Information

Insect: Drosophila anceps
Gene Symbol: Clamp
Assembly: GCA_035045945.1
Location: JAWNON010000062.1:5565966-5568586[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0001 0.007 16.8 1.2 1 23 133 155 133 155 0.99

2 7 0.00019 0.014 15.9 0.7 1 23 379 401 379 401 0.97

3 7 4.3e-06 0.0003 21.1 0.1 1 23 407 429 407 429 0.99

4 7 2.8e-06 0.0002 21.7 3.2 1 23 435 457 435 457 0.99

5 7 3.1e-06 0.00022 21.5 0.3 1 23 463 485 463 485 0.98

6 7 1.4e-06 9.7e-05 22.6 0.4 1 23 491 513 491 513 0.98

7 7 5.9e-05 0.0042 17.5 0.1 1 23 519 541 519 541 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0001	0.007	16.8	1.2	1	23	133	155	133	155	0.99
2	7	0.00019	0.014	15.9	0.7	1	23	379	401	379	401	0.97
3	7	4.3e-06	0.0003	21.1	0.1	1	23	407	429	407	429	0.99
4	7	2.8e-06	0.0002	21.7	3.2	1	23	435	457	435	457	0.99
5	7	3.1e-06	0.00022	21.5	0.3	1	23	463	485	463	485	0.98
6	7	1.4e-06	9.7e-05	22.6	0.4	1	23	491	513	491	513	0.98
7	7	5.9e-05	0.0042	17.5	0.1	1	23	519	541	519	541	0.97

Sequence Information

Coding Sequence: ATGGAAGACCTCACCAAAAACATAATATTCACAAACGCCATCAACGGCCAACCGGCAACCATACAATACCAAACAGCAGACGGCACCATTCTCAAACAACCCAAAATCGAGGGCCAAAAGGCCGACCAACAGCCCACCTTCTACTACACAACAAACGGCAATGGCGGCACTGTAAATCTAGCGCAGTTGGCAACCACAGACGACAATAAGACGTGCTACATTGCACAGCCAGTGGGCGGCTACAATTACGCCTTGGTGAATGGGATGCCACTGAATCAGGGAACAGCACTGGGAATAGCCACTGTGGATGCACAGGGACGCATACAGATTGTCAATCAAAATAAGCCCATGGCGGCGACGATTTCACCGCTCCAAAACACAATATCGAACATCAGCTTCAAGTGTGATGTTTGCTCCGAGATGTTTCAACATTTGGCGCTGCTCAATGCGCACAAGCGAATGCATACTGACGGCTCAGATCCGCAACAGCACAACAACCAGCAGTCGTCAGATGCCATAACGGTAGTTAATGCACAGGGCCTGGTGCAAACGCAGAACATTCTCACCGGCAACGGGCAGATGGGTCAGATACAAATCGTAGCTTCCGATACACTGGAACCAGTGCAGCAATCTgttatgcagcagcagcaacaacaacaacaagcgtcgcaacagcaacaacagcagcagcaacacgatAACTCCAAGTCGAGCAAATGCATCAACTGTGGCAATCCCATACTGCATCAGTCGAAGCGCAAAGGTCCCAAACAGGTGCGCTGTGAGTCCTGCATGCAGGCGGAACAAGctgcgcaacagcaacaaatatttgtagccCCTGATGGACAAATGACGCATCCTGTGCAAATCATATCAACTACACcgcaggctcaggctcagctTCAGCAAATTGTTGCCCAGCAAACGGGTGGCACAACGCCCAAACGTGAACCCAGTTCGTCGGGTCATCATCCGGTGAAGAAACGCAACAGCCAACAGATGACCAAGTGTCAAAAGTGCAATGGTTCCGGCGTAGTGCTAATGGGccaacagcacacacaccaccaTACCGGCGCCGGTGGTTCTGTTAAGCAAAATACAGTCACCGTGAAGACCGAAAATCCCAGTAAACCGTTCAGCTGCAACATTTGTGGCGGACTCTTTTCACGCTACTCCAGCCTGTGGTCCCATAAGAAACTGCACAGCGGCGAAAAGAACTACAAGTGCACCATCTGTGGATTGGCTTTTGCCAAGGCTGTCTACCTAAAGAACCATGCGCGTATACACACTGGCGAAAAGCCGTACAAATGTCAAACGTGTGGCATGCAATTCTCCCAATCGCCGCATCTCAAAAATCACGAGCGCACGCACAGCGGCGAACGCCCgtatgtgtgtggggtgtgcgATAAGGGCTTTGCGCGCCATGCCACGCTGTGGAATCATCGCCGCATTCATACAGGTGAAAAGCCGTACAAGTGTGAAATATGCGGTTCGGCTTTCTCACAGGCGGCACATCTGAAGAATCACGCCAAGGTGCACTCAGGTGAAAAACCGTATAAGTGTGAAATATGCTCAGCAGCGTTTGCTGATCGTTTTGCTCTGAAACGCCATCGTGGCATACATCAGAAGTATGGACAAACGGCGCCCAGGCAGCCAGCCGGCGATGGCATGGTTGTGCACAAACAAGAACTGCCAGACATGGATGACGATGCACAACAGGAGGTTATAATCGGTGGCTTATAG
Protein Sequence: MEDLTKNIIFTNAINGQPATIQYQTADGTILKQPKIEGQKADQQPTFYYTTNGNGGTVNLAQLATTDDNKTCYIAQPVGGYNYALVNGMPLNQGTALGIATVDAQGRIQIVNQNKPMAATISPLQNTISNISFKCDVCSEMFQHLALLNAHKRMHTDGSDPQQHNNQQSSDAITVVNAQGLVQTQNILTGNGQMGQIQIVASDTLEPVQQSVMQQQQQQQQASQQQQQQQQHDNSKSSKCINCGNPILHQSKRKGPKQVRCESCMQAEQAAQQQQIFVAPDGQMTHPVQIISTTPQAQAQLQQIVAQQTGGTTPKREPSSSGHHPVKKRNSQQMTKCQKCNGSGVVLMGQQHTHHHTGAGGSVKQNTVTVKTENPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCTICGLAFAKAVYLKNHARIHTGEKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVCGVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFADRFALKRHRGIHQKYGQTAPRQPAGDGMVVHKQELPDMDDDAQQEVIIGGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00537677;
90% Identity: iTF_00479637;
80% Identity: -