Dana006242.1
Basic Information
- Insect
- Drosophila ananassae
- Gene Symbol
- su(Hw)
- Assembly
- GCA_017639315.1
- Location
- CM029943.1:21801237-21804283[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0004 0.03 14.7 1.9 1 20 221 240 221 242 0.94 2 12 2.2e-06 0.00017 21.8 0.4 3 23 293 314 291 314 0.93 3 12 0.046 3.6 8.2 0.1 1 23 320 342 320 342 0.95 4 12 4.4e-07 3.3e-05 24.0 2.4 1 21 349 369 349 370 0.95 5 12 1.6e-05 0.0012 19.1 2.5 2 23 382 403 381 403 0.96 6 12 8.3e-05 0.0064 16.8 5.3 1 23 414 436 414 436 0.99 7 12 6.5e-05 0.0049 17.1 0.9 1 23 442 464 442 464 0.97 8 12 1.5e-05 0.0011 19.2 0.4 1 23 470 492 470 492 0.98 9 12 1.2e-06 9.3e-05 22.6 2.5 1 23 498 520 498 520 0.98 10 12 4.2e-05 0.0032 17.8 0.6 1 23 524 546 524 546 0.96 11 12 5.6e-05 0.0043 17.4 1.5 1 21 554 574 554 578 0.92 12 12 5.1e-06 0.00039 20.6 0.4 3 23 602 623 600 623 0.96
Sequence Information
- Coding Sequence
- ATGAGCGCCGCGAAGGAGGGTAAGGAGAAGAAGCCTGTTGCCACTGTGGTGAAGATCGTGGAAGTTGAGTCTGTTTCGCCGTCAAAGGACAAGCGCCCCACCCGCATGAAGCTCCTGAACAATGTCTCCGCAAGTTCGCCCCAAACGTCCCCCCCAAAGACGGACAAACGAAGTGGCCCTAAAGGATCACGCATTAAAATACTCAACGAGGATGTGTTGGTCGCACCGAAAGTTGAGAAGAGGCGTTCCACGAAACCTACCAGCCCTGGGGCCACCGCCACCTCGACAGTGAAGATCCTTAACGAAAAGAGGATAGTGCCAGCTGAGGACACTGCGCTTGAAACTACCAAGATTAAAATTTCTCCGCCGAAGAGGAACAAGATGGATCATTATGTACTGCAGCCTGTAAAAGTGGAAAATAACAAGTCTGCCAGCCAAGCTACAGCTGGCGCAACCGGAGAAGACGAAGACACCATCGCCTTTATACTGGGGGACGACGATGAAGTGGTGCCCGCATCCACAAGCCGTTCGAATGGTCAGGAGATATTGGTGACAGAAGAGGAGGAGGAAGAGGAAGAGGATGACTTGGACGAAGAGGGCGATTCACCTGGCGGAAGCAACAAGAATTCCGGCCACAAGGCCGTCAAGGAGATCGTGGAGCACGTGTGTGGCAAGTGCTACAAAACCTTCCGCAGGCTAATGAGTTTAAAGAAGCACTTGGAGTTCTGCCGCTACGACAGCGGCTATCATTTGCGCAAGGCTGAAATGCTGAAGAATTTGGAGAAAATCGAAAAGGACGCGATTGTCTTGGAGAAGAAGGACATATGCTTCTGCTGCTGCGAAAGCTACGATACTTTTCACCTGGGACACATCAACTGCCCCGACTGCCCCAAATCGTTCAAGACACAGACCAGCTACGAGCGGCACATCTTCATCACTCATTCGGAGTTTAGCGACTATCCATGCTCTATTTGTAATGCCAACCTTCGCAGCGAGGCCTTGTTGAAGCTGCACGAGGAGCAGCACAAATCACGGGGCAAGCCCTACGCCTGCAAGATCTGCGGCAAGGACTTCACGCGCTCCTATCACCTGAAGCGCCACCAAAAGTATTCTTCCTGCTCAGCAAACGAAAACGACACTATGAGCTGCAAGGTGTGCGACCGGGTTTTCTACCGATTGGATAATTTGCGATCGCACTTGAAACACCATCTGGGAACTCAGGTGGTCAAGAAACCGGAATACATGTGTCACGTCTGCAAGAACTGTTTCTACAGCCTGTCAACGCTCAACATACATATCCGCACACACACTGGCGAGAAACCCTTTGATTGTGATTTGTGCGACAAAAAATTCTCCGCTTTGGTAGCTCTCAAGAAGCATCGGCGCTATCATACTGGAGAGAAACCTTACAGCTGCACTGTCTGCAACCAAGCCTTTGCCGTCAAGGAAGTGCTTAATCGGCACATGAAACGACACACTGGCGAGCGACCGCATAAATGCGAAGAATGTGGCAAAAGCTTCATTCAGGCCACTCAGCTGCGAACTCATTCCAAAACTCACATTCGTCCCTTCGCCTGCGATATGTGCGAAGAGAAGTTTAAGACCGAGAAACAACTCGAACGCCACGTTAAAGAACATTCTCGCCAAAAGCGCGCCGTATTTTCTTGCACTGAGTGCAAGCGTCATTTCCGCAACACTGCTCAGCTTAAGCAGCACATGGATGCCGGTGACCACTCTGAAAAATCGGGAGAAAAACCACAGCGTGCCAAACGGTCTTCCACCAAGGTATTGGAGCGCACGGATTGCGCCATTTGCGACAAGAACTTCGACAGCAGCGAAACTTTGCGTAAGCACATTCGCTCTGTCCATGAGTGCGATCCAGATGACATCTTTGGCATTCAACCGCCGTCTGCCAAGCGCGCCAAAATCAACAAAATACCAAAGGTTGATGAGGAGGAGGAGGAGGAGGTGGTACCAGTGGCACTGAATGCATCATCGGGTTCCCTGATTTCCAGCCAAACAGACGACAATGGTGTCGTGGTGCGGGAGTTTTTGGTGGACGAAGGCGATGGCACTGCTCAGACTATTACTTTGGAAAACGAAACCTATACCATTCTCCCATTGGATGGAGAAATCGCGGCAGAGCAAATAACTGATGAAGGTGTCAAAGTGGAGGGACAAAAGACGCCGCCCAAGAAGTCCCCGGTCGTTAAGAAAGAGAAGCGAAAGTCCTTGGGTGCTAGCTTGGCTGCAGCAATTGCTGATAACATCGAAGTACCGCCAGTCGAGGAAGACTTTGAGGGTGAAGTTCTGACCGAAGAGGATCTAAAACTGAAAGAAAACATTGCTAAGCTGATTGACATGCTGGTGGATCCGCCGATCTTGAAGAAATACGGCTGGCCAAACGCCCCCGAGGAAATGGTGCTCTGCAAGGTGATCGAAAATTGTGGCTACGATCTGAACAAGGGCGCCGAAAACTACGCCGAACTGGACTACGGCAGCAGGATGAGGGAATACTGCAAGCTATTGTTCACTGTGGTCATTCACAACGATTCCATCAAGTCCCTGCTCAACAACTTTCCAATTGACGATGTGATTGAATATGTGTTGGGGGATGAGGACCAGGACGAGGACGGCGCTGACAAGGAGAAGGAAATTGAGGGAAAAACTCGTCCTAAAGCTGCATCATCGAAAAAGGAAGACGGAAAGGTTTTAAAAGCATGA
- Protein Sequence
- MSAAKEGKEKKPVATVVKIVEVESVSPSKDKRPTRMKLLNNVSASSPQTSPPKTDKRSGPKGSRIKILNEDVLVAPKVEKRRSTKPTSPGATATSTVKILNEKRIVPAEDTALETTKIKISPPKRNKMDHYVLQPVKVENNKSASQATAGATGEDEDTIAFILGDDDEVVPASTSRSNGQEILVTEEEEEEEEDDLDEEGDSPGGSNKNSGHKAVKEIVEHVCGKCYKTFRRLMSLKKHLEFCRYDSGYHLRKAEMLKNLEKIEKDAIVLEKKDICFCCCESYDTFHLGHINCPDCPKSFKTQTSYERHIFITHSEFSDYPCSICNANLRSEALLKLHEEQHKSRGKPYACKICGKDFTRSYHLKRHQKYSSCSANENDTMSCKVCDRVFYRLDNLRSHLKHHLGTQVVKKPEYMCHVCKNCFYSLSTLNIHIRTHTGEKPFDCDLCDKKFSALVALKKHRRYHTGEKPYSCTVCNQAFAVKEVLNRHMKRHTGERPHKCEECGKSFIQATQLRTHSKTHIRPFACDMCEEKFKTEKQLERHVKEHSRQKRAVFSCTECKRHFRNTAQLKQHMDAGDHSEKSGEKPQRAKRSSTKVLERTDCAICDKNFDSSETLRKHIRSVHECDPDDIFGIQPPSAKRAKINKIPKVDEEEEEEVVPVALNASSGSLISSQTDDNGVVVREFLVDEGDGTAQTITLENETYTILPLDGEIAAEQITDEGVKVEGQKTPPKKSPVVKKEKRKSLGASLAAAIADNIEVPPVEEDFEGEVLTEEDLKLKENIAKLIDMLVDPPILKKYGWPNAPEEMVLCKVIENCGYDLNKGAENYAELDYGSRMREYCKLLFTVVIHNDSIKSLLNNFPIDDVIEYVLGDEDQDEDGADKEKEIEGKTRPKAASSKKEDGKVLKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00550375;
- 90% Identity
- iTF_00488146;
- 80% Identity
- -