Basic Information

Gene Symbol
ct
Assembly
GCA_017639315.1
Location
CM029945.1:420431-434105[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.6e-27 4.3e-23 81.0 0.0 3 72 595 665 593 670 0.95
2 3 2.6e-32 4.3e-28 97.0 0.0 3 77 1040 1115 1038 1117 0.96
3 3 1.6e-31 2.6e-27 94.5 0.0 3 76 1331 1405 1329 1408 0.96

Sequence Information

Coding Sequence
ATGGCACGCAACTCGGCGCTGGAGCTCCTTATTTGCATATGGGCCGATGTCCTGGTATCCTTCATCAGGGGGATACAGAAAGGATACCTTGAGGTACAAAGAATCGATGAGATTAAGGCCCTGCTGGACGAACTGCAGCGCCTGCGGGCCCTCGAGCAGACCCACCTCGTGCAGATCCAGCGCCTCGAAGGACACCTGGAGGTGAAGCGCCAGCACATCATCCGCCTGGAGGCCCGCCTCGACAAGCACCAGATCAACGAGGCGCTCGCCGAGGCCACCGCCCTGGCGGCTGCCACCAACAACAACAACAACAACAACATTAGCCAGAGCAGCGACAACAACAACAAGCTGCCCCTCGAAGCCCCAGAGCTGGCCGAGGCCGCCGCCGCCGCCTGCGCCTCCGCCGTCGTCGAGGACGAGGAGGAGGAGGAGGAGCGCGACCAGGCCATGCTGGTGGACGGCGAGGAGCAGGAGGACAACGACGAGAAGGAGGAGAAGGAGGAGGAGGAGCTGGAGGAGGCCGAGGAGGCCCCAGTCCTCCCAGCCACCAACGAAGGCAACGAGCTCAAAATCAAAAAGGAACAGCACAGTCCGCTGGATCTGAACGTGCTCAGTCCTCAGTCGACGATCGCCGCCGCCGCCGCGGCCGCCGCAGCCGCCGCCTGCGCGAACGACCCCAACAAGTTCCAGGCCCTGCTCATGGAGCGGACCAAGGCCCTGGCCGCCGAGGCGCTGAAGAACGGCAGCGGGGACGCCGCCAATGAAGAGACGAGTCCGCCGGCCCAGGCACTGCCCAGCACTGCCCAGGAACCGGAGCTGGCCAAGCTGGCCAAGCAGGAGCTGGCCGACGACCAGGAGCCCCCCACGGCCGCCGGCTACTGGCGACGCGGCTTCGAGGCGGACTCGGCCGGGAGCAAGTCCGGGAGCAAAACGCCCACCGCCCTCTACCAGAGCTTGGCGGCGATCGAGCAGGGCAGGCTGCTGCCGCCGCCCCCGCCCCCGCCTCCGCTGCCACCCAGCCAGCACTTTGGCCCTCCGGCTGCCACGCCTCTTTATCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCCTCGTCCACCGCCTTGCTGAGCCAACTGGTTAACTCGACATTTTCCAACTCCACCCCCTCTTCTTCCTCCACCCGCCTAGATGGAAGCCTCTCGCAGCCGCAGCCCCCGCACCACCACCCGCAGCACCCACAGCACCCGCACTCGGCCGCCAGCCAGCCGAACCCCGCGGAGAACCACCACCACCACCTGCACCTGCTCCACCCCTCGGCCGCCGCGGCGCACCACCTGCAGCAGGCGCAGCAGCACCACCATCACCACCACCACCAGGACGGCAGCTCCAGCTCGAGCGCCACCAGCACCCCGGCCAGCAACGGCGCCAAGGCGGCCCAGATGCTCCAGGACCCGGAGTCGGCCGCCGCCACCGCCACCGCCAACGGACTGGCCGCCGCCGCCATGGCCGCCCACGCCCAGCACGCCCTCGGCCCGGCCGGGTTCCTGCCGGGCCTCTCGCCGGCCTTCCAGTTCGCCGCCGCCGCCGCTGCCGGGCAGGACGCCCGCGGACACTACCGGTTCGCCGACGCGGAGCTGCAGCTGCCCCCGGGCGCCTCGATGGCCGGCCGGCTGGGCGAGTCCCTCATCCCCAAGGGCGACCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTACGCCAACCAGGCCCTGGACACCCTCCACATCTCGCGCCGCGTCCGCGAGCTCCTCTCCGTGCACAACATCGGCCAGCGGCTCTTCGCCAAGTACATCCTGGGCCTCTCGCAGGGCACCGTCTCGGAGCTGCTCAGCAAGCCCAAGCCCTGGGACAAGCTCACCGAGAAGGGCCGGGACAGCTACCGGAAGATGCACGCCTGGGCCTGCGACGACAACGCCGTCATGCTGCTCAAGTCGCTGATTCCCAAGAAAGACTCTGGCCTTCCCCAGTACGCCGGCCGAGGACCCGGCGGCGGAGGCGACGACTCCATGTCCGAGGACCGCATCGCCCACATCCTGAGCGAGGCCTCCTCGCTGATGAAGCAGTCCAGTGCCGCCCAGCAGCAGCGGGATCACGGCCGCGAGGACTCCCACAGCAACGAGGACAGCAAGTCGCCACTCCAGAGCTGCACCTCGCCCTTCTTCAAGGTGGAGCAACAGCTCAAGCAGCAGCACCTCACTCCGGATCAGGCCCAGCAACAGCGGGAGCGTGAGCGCGAAAGGGAGCGCGAGCGGGAGCAGCAGCAGCGGCTGCGGCATGAGGATCTCGCCCAGGACAAGATGGCCCGGCTCTACCAGGAGCTCATTGCCCGCACTCCCCGTGAGACGGGTTTCCCCAGCTTCCTGCTGTCGCCCTTCTTCGGAGGAGCAGCCGGCATGCCAGGAGCAGCCGCCAACGCCTTCCCCGCCGCCATGGCCGCCGACGAGAACATGCGGCACGCCTTCGAGCGGGAGATCGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAACTTCTCCAGCCTGATGGCCCTGCAGCAGCAGGTGCTCAACGGCGCCCAGGATCTCTCCCTGGCCGCCAAGGACATCAAGCTGAACGGCCAGCGCTCCTCGCTGGAGCACAGTGCCGGCAGCAGCAGCTGCTCCAAGGACGGCGAGAGGGAGGACAACTACGCCGCGTCCCTACACGGCCTCAAGTCGGAAGGAGGCGGCACTCCTGCTCCTCCCTCTGCAGGACAGCCGCCCTTGGCGTCCTCTGGTGGACCAGGTGCAAGTGGAGCCTCCGGTGGTGCCGGCAGTAACTCGGCAGCCCCTAGCCCTCTGAGCAACTCCATCCTGCCACCGGCGATGAGCAGCCAGGGCGAGGAATTTGCCGCCACAGCGAGCCCTCTCCAGAGGATGGCCTCGATCACCAACTCCCTGATCACCCAGCCCCCGGTGACGCCCCACCACAGCACGCCCCAGCGGCCGACCAAGGCGGTCCTGCCGCCGATCACCCAGCAGCAGTTCGACATGTTCAACAACCTCAACACGGAGGACATCGTGCGCCGGGTGAAGGAGGCCCTCTCCCAGTACTCGATATCCCAGCGACTCTTCGGCGAGTCCGTGCTGGGCCTCTCGCAGGGATCCGTCTCGGACCTGCTGGCCCGGCCCAAGCCCTGGCACATGCTGACCCAGAAGGGGCGCGAGCCCTTCATCCGCATGAAGATGTTCCTGGAGGACGAGAACGCAGTGCACAAGCTGGTGGCCAGCCAGTACAAGATCGCGCCCGAGAAGCTGATGCGCACCGGCAGCTACAGCGGAAGCCCCCAGATGCCGCAGGGCTTCGCCTCCAAGATGCAGGCCGCCTCGCTGCCCATGCAGAAGATGATGAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCTGACCTCGCCAGGCCTACCACCCCAGCACGCCATCAGCCTGCCGCCCGGCGGCGGCAATGCCAGCGCCGGATCTGGCTCCGGAGTAGCTCCCGGGGGAGCTCCCAACGCCAACAACGCCAGCCCTGCCGGCGGCGGTAGCGCCGAGAAGAAGCCCATGCTGATGCCCGTCCATGGTGCGAACACCATGCGAAGCCTCCACCAGCACATGTCGCCCACCGTCTACGAAATGGCCGCCCTCACCCAGGACCTGGACACCCACGACATCACCACCAAGATCAAGGAGGCCCTGCTGGCCAACAACATCGGCCAGAAGATCTTCGGCGAGGCGGTCCTCGGACTCTCCCAGGGCTCCGTCTCGGAGCTGCTGAGCAAGCCGAAGCCCTGGCACATGCTCTCGATCAAGGGCCGGGAGCCCTTCATCCGGATGCAGCTCTGGCTGAGCGACGCCAACAACGTGGAGCGGCTGCAGCTGCTGAAGAACGAGCGGCGGGAGGCCTCCAAGCGGAGGAGGAGCACCGGACCGAACCAGCAGGACAACAGCAGCGACACCTCCAGCAACGACACCAACGACTTCTACACCAGCAGTCCCGGGCCCGGCTCCGTGGGCAGCGGCGTGGGTGGAGCCCCGCCCAGCAAGAAACAGCGCGTCCTCTTCTCCGAGGAGCAGAAGGAGGCCCTCCGCCTGGCCTTCGCACTCGACCCGTACCCCAACGTGGGCACCATCGAGTTCCTGGCCAACGAGCTCGGCCTGGCCACCCGGACGATCACCAACTGGTTCCACAACCACCGCATGCGCTTGAAGCAGCAGGTGCCGCACGGCCAGCCCGGCCAGGACAACCCCATCCCGAGCCGCGAGAGCACCAGTGCCACGCCCTTCGATCCCGTCCAGTTCCGCATCCTGCTGCAGCAGCGCCTCGTCGAGCTGCACAAGGAGCGCATGGGTCTGAGCGGCGCCCCGATCCCCTATCCGCCGTACTTCGCCGCCGCCGCCCTTCTGGGCCGCAGCCTGGGGATTCCCGGAGCGGCGGCAGCTGCCGGAGCAGCGGCTGCAGCAGCGGCAGTGGGTGCCGCCGGCTCCGGCGGAGCCGATGAGCTGCAGGCCCTCAACCAGGCCTTCAAGGAGCAGATGAGCGGCCTGGACCTCTCCATGCCCAGCCTGAAGCGCGAGCGCAGCGCCGACTACCAGGACGACATGGAGCACAACCTGAGTGACAACGAGAGCCTGGAGGGCTCCGGCGGCCAGGACGGAGATCTGGACAAGACCGGGGGCACCACCGACTACGAGAAGGTCCTCCACAAGTCCGCCCTCGCCTCGGCAGCGGCCTACATGTCGAATGTGGTAAGAAGCTCCCGCCGCAAGCCGGCGGCGCCCCAGTGGGTGAATCCCGCTGGAGCCGGAGGTCCTGCCGCCAATCCCGTGGTGGCCGCCGCCGTGGCAGCAGCCGCAGCAGCAGCAGCGGCCGCCGAGGGCGAGCGGATCATCAACGGCGTGTGCGTGATGCAGCCCTCGGAGTACGGAGTGCGGGGCGAGGATAACGAGGGCAAGGGCGGCGAAGACTCCTCCATGGGAGGCGGCGACGCCGAGCTGGAGATCGACCAGCGCTTCATGGAGCCGGAGGTGAGCATCAAGCAGGAGGAGGACGACGAGGAGGAGGAGGAGCCAGTCCAGGCGCACCCACTCCTGGAGGGCGCCGGGGAGGAGGCCGCCGAGCAGAAGCTCAAGGTCGTCAACGAGGAGAAGCTGCGCATGGTGCGGGTGCGTCGGCTCAGCAGCAACGCCGAGGAGTCCGCCGTGGGAGACTCCGCCAGCGGCGCCTCCAACCCCGCCGCCTGCTCGCCGCCAGCCGGAAACGGCAGCGGGGCCGGAGTGGGAGCCGGAGCCGGCGCTGGCTGGTCCTATTAG
Protein Sequence
MARNSALELLICIWADVLVSFIRGIQKGYLEVQRIDEIKALLDELQRLRALEQTHLVQIQRLEGHLEVKRQHIIRLEARLDKHQINEALAEATALAAATNNNNNNNISQSSDNNNKLPLEAPELAEAAAAACASAVVEDEEEEEERDQAMLVDGEEQEDNDEKEEKEEEELEEAEEAPVLPATNEGNELKIKKEQHSPLDLNVLSPQSTIAAAAAAAAAAACANDPNKFQALLMERTKALAAEALKNGSGDAANEETSPPAQALPSTAQEPELAKLAKQELADDQEPPTAAGYWRRGFEADSAGSKSGSKTPTALYQSLAAIEQGRLLPPPPPPPPLPPSQHFGPPAATPLYPPXXXXXXXXXXXXXXXXXXXXXXGPSSTALLSQLVNSTFSNSTPSSSSTRLDGSLSQPQPPHHHPQHPQHPHSAASQPNPAENHHHHLHLLHPSAAAAHHLQQAQQHHHHHHHQDGSSSSSATSTPASNGAKAAQMLQDPESAAATATANGLAAAAMAAHAQHALGPAGFLPGLSPAFQFAAAAAAGQDARGHYRFADAELQLPPGASMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGPGGGGDDSMSEDRIAHILSEASSLMKQSSAAQQQRDHGREDSHSNEDSKSPLQSCTSPFFKVEQQLKQQHLTPDQAQQQREREREREREREQQQRLRHEDLAQDKMARLYQELIARTPRETGFPSFLLSPFFGGAAGMPGAAANAFPAAMAADENMRHAFEREIAXXXXXXXXXXXXXXXXXPNFSSLMALQQQVLNGAQDLSLAAKDIKLNGQRSSLEHSAGSSSCSKDGEREDNYAASLHGLKSEGGGTPAPPSAGQPPLASSGGPGASGASGGAGSNSAAPSPLSNSILPPAMSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGFASKMQAASLPMQKMMNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLTSPGLPPQHAISLPPGGGNASAGSGSGVAPGGAPNANNASPAGGGSAEKKPMLMPVHGANTMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSGVGGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELGLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRESTSATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLGIPGAAAAAGAAAAAAAVGAAGSGGADELQALNQAFKEQMSGLDLSMPSLKRERSADYQDDMEHNLSDNESLEGSGGQDGDLDKTGGTTDYEKVLHKSALASAAAYMSNVVRSSRRKPAAPQWVNPAGAGGPAANPVVAAAVAAAAAAAAAAEGERIINGVCVMQPSEYGVRGEDNEGKGGEDSSMGGGDAELEIDQRFMEPEVSIKQEEDDEEEEEPVQAHPLLEGAGEEAAEQKLKVVNEEKLRMVRVRRLSSNAEESAVGDSASGASNPAACSPPAGNGSGAGVGAGAGAGWSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00481449;
90% Identity
iTF_00477241;
80% Identity
iTF_00475839;