Basic Information

Insect: Drosophila ambigua
Gene Symbol: GLIS3
Assembly: GCA_018150905.1
Location: JAECWS010000086.1:2622884-2628017[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.35 24 5.4 0.7 3 23 465 488 463 488 0.89

2 5 0.14 9.2 6.7 0.4 1 23 497 524 497 524 0.88

3 5 5.4e-06 0.00036 20.6 0.7 2 23 531 554 531 554 0.95

4 5 0.00069 0.047 13.9 0.8 3 23 562 584 560 584 0.92

5 5 2.8e-05 0.0019 18.3 0.4 1 23 590 614 590 614 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.35	24	5.4	0.7	3	23	465	488	463	488	0.89
2	5	0.14	9.2	6.7	0.4	1	23	497	524	497	524	0.88
3	5	5.4e-06	0.00036	20.6	0.7	2	23	531	554	531	554	0.95
4	5	0.00069	0.047	13.9	0.8	3	23	562	584	560	584	0.92
5	5	2.8e-05	0.0019	18.3	0.4	1	23	590	614	590	614	0.94

Sequence Information

Coding Sequence: ATGTCTTCCACGCTCAAGTCACAGCAACTGCCACTGAGCATTCCCAGCCACGGCGGCGGCATGTACGCTGCCAAGACGGCACCATCGATGCCCGGCAAGGCCTTCGAGGAGAACACTTGCTACGGCGGCTTCATATCGCCCCCGCTGAGTGCCACAATTGGTGGCAGATCGGCGCATCGTAACGACACCTTTCGGGCCCCGCTAAAGGTGGAGCCGGCCGGCAGCGAGGCGTACAACAACTTCACCAGCGGCGAGCTGCAATTTCCGGACTTTTCGCACCTCTGCTTTGCCGCCGAAACACCCAATTCGGTGTTCAGCGACTGCCACAACTATGTAGGGCAGGATCAGGATCGGGACTTTGACCAGGAGCAGGATGATATTGTGTGCGCGGCGGCGGACCACACGGGCATGCCGTACCAGCAGGGCCAGTACACACAGCTCAACCGCGAGGATATCTTCCGCTTCGAGCCGGAGGACATTGCCCGGCTGACCGGTGAGCCGGACTTTTCCGGATTGATGCAGCCACCGCCGCCGACGCCCTACACGCCCTACACGCCCTGCAGCGCCCAGTCCAGCCAGTTGGCGGTCGCTGCCGCCTCGTCGCTGGCCGCCTCGCAGGCCGACTCCATTAACCTGGATATTGATTATTTTAATTATGACGAAATTAATTGCCAATCGAAAAACCAATCACCGTGCTCATCACCGCACCTGGATGCCTGGTTGAATTTCAATCTCGGCGAGATGCCAGTCACGGCAGACACATCCGCCACGGCAGCCGCCACAGCCACATGCACATCGTCGCCCAAACTGTGCAACATGTACGATGGGCTGCAGCAACACATCAAGCAGGAGTCCTCGCCCACCAAACTGCCATCGATGAGCTCGACATTCGGGACGCCCAAGTGCATTCCCATGTGCGCCAGCAATTACGACGATTACTCGAATCTCTATTCCGGCCCGGGGGCGCAGTATGCGGCCGAAAATTATCAAAATAATATGTCGCACGCCATCGAAAAGCCGAACCGTGAACACAAAATCATCTGGACGATTGACGAGCTCGACGAACTGATGCTGGGCGACGGCGGCAGCGGCAGCGGCAGCAGCAGCAATCAGCAGCCACCGCAATCGCAAAGTACCAAATCCGATATGGCTAATTACGTTGCGGATGAGTTGATCAAAACTGAGGTAGTTATGGGCATGGGGGGCCTGGGCAATGCGGACAGCGAGGACGATGACAATGAGTATGAGGAGGAGGCCCACGACCTCGACCTCGACAACGAGGTGTTTGCCCAGCCCGCGGACAGCGCGTACAAGCCGGAGAGCTGCTGCGATGCGGATGCGGCGGAGGTCGAGGCGGAGGCGGAGGCAGAGGCCGAACCACTGCCACTCATCTGTCGCTGGAGCGGCTGCAATGTGGAGTTCCCGCACCAGCAGGCCTTCGTGGAGCATATCGAGAAGTGTCACGTTGATGTGCGCAAGGGCGAGGACTTCTCCTGCTTCTGGCTGGACTGTCCCAGGCGCTACAAGCCGTTCAATGCCCGCTACAAATTGCTCATTCACATGCGTGTCCACAGCGGCGAGAAGCCCAATAAATGTCCGTTTCCCAGCTGCAATAAAGCATTCTCGCGTTTGGAAAATTTGAAAATTCATCAGCGCTCGCACACGGGAGAACGGCCTTATGGCTGCCAGTATAAAGGTTGCCTCAAAGCGTTCAGCAATAGTTCGGATCGGGCGAAACATCAAAGGACCCACTACGATACGAAACCGTATGCCTGCCAGCTGCCAGGATGCACCAAGCGCTACACGGATCCCTCCAGCCTGCGCAAACATGTCAAGAATCACGCGCTGCGCAATGCCAATGGACAGCTGGTGCGCCGCAAATCTGCCGGCGGCGGCGGGGCTGGCCCAGCGAATGCCTGCAGCAAGAAGGCAGCCAAAACACGCCGTCACTCGGAATCGGCACTGGCACAGGCCCAGGCACAGGCACAGGCTCAGGCGCTGGCTCTGGGCGGTGGTGTGCTGCCCCAGCGAATGGGCCCAGCCACAGCCCCCGCACGGTACGGGCCTCAGCCTCAGCCTCAGCTAATGGGATTAGCGCCGTGGAGGACACACAGGGCTGGCAAATGCCATTTGAGCGAGTTTGTGTCGTTCGAGTACGTGACAAAGTACATCACGGACTCGTACGAGCCAGCAACGGGCAAGAGCCCGGCAGTTAATTTGCAATTACAATCGGAGTTTGATAGTAACTTCGATATGCTGGACTTTCAGGAGTTCATCTGA
Protein Sequence: MSSTLKSQQLPLSIPSHGGGMYAAKTAPSMPGKAFEENTCYGGFISPPLSATIGGRSAHRNDTFRAPLKVEPAGSEAYNNFTSGELQFPDFSHLCFAAETPNSVFSDCHNYVGQDQDRDFDQEQDDIVCAAADHTGMPYQQGQYTQLNREDIFRFEPEDIARLTGEPDFSGLMQPPPPTPYTPYTPCSAQSSQLAVAAASSLAASQADSINLDIDYFNYDEINCQSKNQSPCSSPHLDAWLNFNLGEMPVTADTSATAAATATCTSSPKLCNMYDGLQQHIKQESSPTKLPSMSSTFGTPKCIPMCASNYDDYSNLYSGPGAQYAAENYQNNMSHAIEKPNREHKIIWTIDELDELMLGDGGSGSGSSSNQQPPQSQSTKSDMANYVADELIKTEVVMGMGGLGNADSEDDDNEYEEEAHDLDLDNEVFAQPADSAYKPESCCDADAAEVEAEAEAEAEPLPLICRWSGCNVEFPHQQAFVEHIEKCHVDVRKGEDFSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPSCNKAFSRLENLKIHQRSHTGERPYGCQYKGCLKAFSNSSDRAKHQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNHALRNANGQLVRRKSAGGGGAGPANACSKKAAKTRRHSESALAQAQAQAQAQALALGGGVLPQRMGPATAPARYGPQPQPQLMGLAPWRTHRAGKCHLSEFVSFEYVTKYITDSYEPATGKSPAVNLQLQSEFDSNFDMLDFQEFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00611649;
90% Identity: -
80% Identity: -