Dalg003553.1
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- -
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010000535.1:192721-195730[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.035 2.9 8.7 0.0 1 20 334 353 334 355 0.83 2 8 0.58 48 4.9 2.3 1 17 732 748 732 749 0.90 3 8 5.7e-05 0.0047 17.5 1.3 2 23 767 788 767 788 0.97 4 8 6e-06 0.0005 20.5 2.3 1 23 794 816 794 816 0.97 5 8 3.6e-05 0.003 18.1 0.9 1 23 822 844 822 844 0.98 6 8 0.00032 0.027 15.1 1.2 1 23 850 872 850 872 0.97 7 8 0.016 1.3 9.8 0.3 2 23 879 900 878 900 0.96 8 8 0.0011 0.088 13.5 1.2 1 22 906 927 906 927 0.96
Sequence Information
- Coding Sequence
- ATGCGTCAGAAATGTGGCACCGTCTACACCTGGAACTGTGCTGGAGAGCTTTATGCCATCGAGTGTGCCCTCTGCGAGGAGCGGCCCCTTGCACTCTTAACGAGTTCACCGCGCATATGGAGGTATTCAGCTGCACCTGTAGCCCCTGTAGATGAGCTGATGCAGGAGGTGCTAGCAGAGCAACGCACCAGCGAAGCGGACAATGAGTTAAAGCAGCAGCTGGTCCAGCAACTGAATGCCATAGATCAGccagtggcagaagcagaaaaaaagacagcagcagaaccgACAGTCGTCAGTGAGCAAGTGAAGTTCGCCCTTGAGAACCCGGCGCCCGTGCCGGAGGGCCAGCGGCTGACCACACAGCATGTCAACCAGCTTATCGAACTTTACCGAGCGGAGCCACGTCTCTGGAACCAATCACACCCGCAGTACCACGATACGGAACTGTGCCGAAAGTCCTGGCGCCGTATCACGGATGCCTGGAGCGTGCACTGCGGTCGCCGCTTCACTGTCACCGACGTCCGCATACGAGTCTCCACGCTATGCCAGCGCTTCATCAAACAGCGCGAGCGCCTCGAAGCTGATGGTGAGCTGGACGACTCCGTTAAATTCGTCCACTACGACCAGTTGGGCTTCCTCTGCGAGCAGCAGGCGCTACTCAAACGCCAGCAGCACTTCGTTCGCGAGAACCGCAAGTTGATCGAGCTCTATGAGCATTACCCGATCTTCTGGCACAATGCCCACAAGCGACTGCGATGCGCAGACACTGTGAGGGCGCGCCACGAAGCGCTACGCGATCTTCAGTTGGCTTTGCGCCTGTCTGGTGTTAATCTGTCCTCACTGGTAATTAAGCGGCGGTTGCAGTCTCTGCGGAAACGATATCGCCTAGAGAAGATCCGGTATCTGCACTGCGTGGTGGAGGGAAAACAAGCGGATTTCGTCGCCGGCTTCGAGCACTATGAGGAGATGGAGTTCCTCCATAAGCACATTGATCCATATGTGTGCGCAGTCTGCGGCAAGATCTTTGAGAATTTAGCGAGTCATCAGGCGCACGTGCAAAGCAACTGTCAGATGGAAATGGATGTTGGTCCAGAGAAAGAAGCtgaagagggggaggaggaggagaagtcGGAACTGGTGCAAAAGGAGGAACAAGAAGAAGACCTTCAGCAGGTGGATGGCTTCCATATTTTGAAAGATCTGCAGCACGTTAAGTACCCGCATCAGGTGGAGCAGAATCTCCACCCTGTAGAGGACCTTCACTCGACTATAAACTTCCAGCCGGTTCCCAATGTTCCTGAAGTGCAGAAGAATGAAGATCTCCAAGATCTGGATGATATCCCGCAGATGATTGAACTTCTGGGGAATCTCCAGGAGATGGATGAGCCTGCATTAGGGCAGCCCATTATGGAGGCTACAGTAGGGTCTGTGCCCGACCACGATCAAAACACTCCTCTGCCCACATTTTCCGAGCCCTATTCAGCCACAGACCTGGAAGCTTTGTCCTTGGTGCCATCAGAGTTGGAGCCAGGAGAGAGCTCTACCGTCCGTCTCAGCCGGCAGCAGACACTAAAGCTGATTAAGCTGTACCGAGCGAACGTGTGCCTGTGGGATCCCAACCACTTGGACTACCATACACGTAAACATCGCCGCCTGGCTTGGCAGAGAGTCATGGACGAGTTTAACGCGAGCGAGCGCACAGCCACGGGCCAGAGATACAGTTGGCAGATGTTGCACCGAAAGATCACGGACTACACAAAGTATTACCGCCGGGAGCGACAGAGGGATCAAAAGGAGGCCATTAGCTGGAGCTTCTATGAGGAATTCCGCTTCTTGGACGACGTGCTTCCAATCAGCTGTGAAATACAGAAAACGCTTAACCAGCGGGACAGCACCCTCAAGATCATCACCGTATACCAAAGCTATGCTCAGCTCTGGTGCACCGACCATCCGGACTACACGAAGCGGCGGCAGCGCCAGCGGCAGCTGGAATCGCTTTGCACGCGCCTGCAGGAGGAGTGTAACTTGCAAATTACCGTGGAACGACTCAAGGGCCGGCTAATTGAATTCCGCTGCCAGTATCGGCAGTGTAAGGAAGCGCGGATTGCGGCCATCAAGAAGTCCGAACCCTGGACTCCCGAATACGAGTACTACGAGCAACTTCGCTTCCTCGAGCTCCACGTGTCGCCTTTCATTTGCCCCCGCTGCACGGCGTCATTCAAGCGGCGCACAGACTTTTGCAGCACGAGCGGAACATGTGGGAAGGACAAGGACAGTCCCAATGACCTAGCCAACGTCTGCCACATTTGCGGCTTAAAGTTCTCGCTGCGTAACAGTCTACTGGCTCACTTGAGGCGGCATCTCGGCCAGCGCACTCACATCTGCTCGGAGTGTCCCAAGAAGTTCTTCAACTCAACGGCCCTACGTGTTCACCAGCGCACTCACAGCAAGGAACTGCCATATGTATGCGAACACTGTGCCCGGGGCTTCGTCAACGCCAGCAAACTTAACCAGCACGTGAAGCGGCACCGCAACCAACGCGACTTCCCCTGCAACCGCTGTGACAAGGCGTTCTACACTGCCCACGAGCGCGACCGGCACATTCGCGCCCACCTAAACATACGCGACAAGGTCTGCCCCCACTGTTCGCGGGCCTTTGTCGTAGGCAGCGCTTACTACTCCCACCTTAACCTACACCGCAGCGAGAAGCGCTACTCCTGCACCAACTGCAGTCGCCGCTTCGCGCAGTACGCCGGCCTGTACAAGCATCGCCGACGCTGTATTCCCGCTGATGTGCAGGCCGAGGAGTAA
- Protein Sequence
- MRQKCGTVYTWNCAGELYAIECALCEERPLALLTSSPRIWRYSAAPVAPVDELMQEVLAEQRTSEADNELKQQLVQQLNAIDQPVAEAEKKTAAEPTVVSEQVKFALENPAPVPEGQRLTTQHVNQLIELYRAEPRLWNQSHPQYHDTELCRKSWRRITDAWSVHCGRRFTVTDVRIRVSTLCQRFIKQRERLEADGELDDSVKFVHYDQLGFLCEQQALLKRQQHFVRENRKLIELYEHYPIFWHNAHKRLRCADTVRARHEALRDLQLALRLSGVNLSSLVIKRRLQSLRKRYRLEKIRYLHCVVEGKQADFVAGFEHYEEMEFLHKHIDPYVCAVCGKIFENLASHQAHVQSNCQMEMDVGPEKEAEEGEEEEKSELVQKEEQEEDLQQVDGFHILKDLQHVKYPHQVEQNLHPVEDLHSTINFQPVPNVPEVQKNEDLQDLDDIPQMIELLGNLQEMDEPALGQPIMEATVGSVPDHDQNTPLPTFSEPYSATDLEALSLVPSELEPGESSTVRLSRQQTLKLIKLYRANVCLWDPNHLDYHTRKHRRLAWQRVMDEFNASERTATGQRYSWQMLHRKITDYTKYYRRERQRDQKEAISWSFYEEFRFLDDVLPISCEIQKTLNQRDSTLKIITVYQSYAQLWCTDHPDYTKRRQRQRQLESLCTRLQEECNLQITVERLKGRLIEFRCQYRQCKEARIAAIKKSEPWTPEYEYYEQLRFLELHVSPFICPRCTASFKRRTDFCSTSGTCGKDKDSPNDLANVCHICGLKFSLRNSLLAHLRRHLGQRTHICSECPKKFFNSTALRVHQRTHSKELPYVCEHCARGFVNASKLNQHVKRHRNQRDFPCNRCDKAFYTAHERDRHIRAHLNIRDKVCPHCSRAFVVGSAYYSHLNLHRSEKRYSCTNCSRRFAQYAGLYKHRRRCIPADVQAEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471878;
- 90% Identity
- iTF_00484628;
- 80% Identity
- -