Basic Information

Insect: Drosophila algonquin
Gene Symbol: -
Assembly: GCA_035041765.1
Location: JAWNKY010001574.1:1076460-1078489[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.6 6.3e+02 1.4 0.1 2 8 19 25 18 43 0.83

2 8 0.044 3.7 8.4 1.2 2 23 425 447 424 447 0.94

3 8 0.00028 0.023 15.3 2.1 1 23 454 477 454 477 0.97

4 8 4.3e-06 0.00035 21.0 2.6 1 23 482 504 482 504 0.98

5 8 8.4e-05 0.007 16.9 0.1 1 23 510 533 510 533 0.91

6 8 9.7e-06 0.00081 19.9 0.6 1 23 539 561 539 561 0.99

7 8 1.1e-05 0.00094 19.7 3.4 3 23 569 589 568 589 0.97

8 8 4.1e-05 0.0034 17.9 0.8 1 23 595 618 595 618 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.6	6.3e+02	1.4	0.1	2	8	19	25	18	43	0.83
2	8	0.044	3.7	8.4	1.2	2	23	425	447	424	447	0.94
3	8	0.00028	0.023	15.3	2.1	1	23	454	477	454	477	0.97
4	8	4.3e-06	0.00035	21.0	2.6	1	23	482	504	482	504	0.98
5	8	8.4e-05	0.007	16.9	0.1	1	23	510	533	510	533	0.91
6	8	9.7e-06	0.00081	19.9	0.6	1	23	539	561	539	561	0.99
7	8	1.1e-05	0.00094	19.7	3.4	3	23	569	589	568	589	0.97
8	8	4.1e-05	0.0034	17.9	0.8	1	23	595	618	595	618	0.97

Sequence Information

Coding Sequence: ATGGAAACTTGTGGGTTTATCTATGTGAGCAGAGACTACCAAACGTTTTTGATGCGATGCTCGTATTGTCCCAAAGACGTTGAGGTAGAAAAATGGCAGGAATTTGTGGTGCACTATCAAAATATGCACAGCGAACTGGCCACAAAGCAGGCCGAGGAAACCGTGGAGAATACcactccaacagcagcagttgcaataGTTGACGGCTATCGCAATATGCGAAGCGCTTTGGAACTGGATGCAGAACGCAGAGGCATGAACATGGACACCGACACCAGCTTTAAAGCAGAGTTTCTGGATGATGATTACCACGATGTGACAGCATCTGACGAAGGAGGTGAACACGATGACGAGAAAGAGCATCTGAAGGATCTGGAGCATTTAGAAGATGTCCTGCCTCTAGATAATGAAGTTCCAGATGGCGATGGCACAAAAATACAGTTGGAAATCGAGGCTGTCACTTCGCAGAGAGCCTCATCGTTATACGAGTCGGATTCCGAGACAAGTCAAAACGAGTATGTGGAAACGGACATGGAAGCTGAATCCAATAGGTCTGCAGAAAACGAGGATGAAACGACTGATCTGACTACTCCCATATACAAGTTTCACCCATCGTTCTTTCGGCGGGATCCTCGAACGCTGAGGTTCATTGAGCTCTACAAGGAACATCCGTGCCTTTGGAACCCGGGAAATAGCCGCTTTAAGGACCTCAACGCATGCAAGGAAGCCTATCGGAAGATGATATGTGATTTGGAGGCGAAGGCAGCGATGTTTTTAAATGAAGTCTCGCTAAAAGCTTCCATAAGGAAGGTACATCTGCAATACAACACCGTTCACAAGCGAGTGCTCAGTGGCACCCAGAAGTCCCAATCTGTGGCCTTCCACCATTATAAAATCTGTAGCTTTTTACAAGACAGCGAGGATAAAAAAGACTTgtacaaaaacgaaaaaatacaGCTGGATTTCACCAAGAAAAATAAGCTGACTACAGAGCTAATAGAGCTATATGCCAACTTTCCGCAACTCTATGATCCCACGCACAGCGAGTTCTCCAGCATGAATTCCCGCAAGCAGGCCTATGAGAGTTTGGCTGTCGAAATCTCCGTGCCGAATGTTGATATCAACAGCGATGATATTTTTCTTGCCATCCAAAACATACGACAATGGTACTACAAGAGCACGAAACATGCTATCAACGCTGGCAATGAGGCAGAGCAGTTTTATTTGAAGTTCTGTCGGTTCCTGCCTCCGAAAATGTTCAAGCAGAGGCTGGTCTGTGAAATTTGCCATACAGTCACCTCATCTGATCATGTACTTCAGTCGCACATCTTCAAAGCACACAATATTGGCGAGCTGCCATTTAAATGCACTCTATGCGATCGGAGCTTCGTTGGACGGTGTGAACTGGCCAACCACAAGCAACGGGTTCACATTGGCAAGACGCACCAATGCGGCCATTGCGAAAGAAGTTTTGCCGTTAAGTCGGATTTACAATTGCATGTCCGTACGCATACCGGCCACAAGCCCTACGTCTGCGAGCTGTGTGGCAAGGCATTTCGGCTTAAGTCGCAGATGAATCTTCATGTCACAGCTATTCACACGAAAGTGAGAGCCTTCAAGTGCACAATGTGTCCGAAGGATTTTGTGAAGAAAGTCGACTTGTCGGACCATATCAAGAGTCATTTGAATATCCGCGACAAAATATGCAACATTTGCGGCAAAGGATTTACGAGCTGCCACTCTCTTATCCGCCACCGCCAAATACACTCCGAGGTAAAGAAATTTGTGTGCAAACTGTGCGATGCACGTTTTTCGCAGTTTGTTGGCCTGAATTCTCACATGAAGCGCACCCATAATATTGTTCGCAACAATTTACAAAAGGCGACCGATAGTGTCGAGcgagaaaattaa
Protein Sequence: METCGFIYVSRDYQTFLMRCSYCPKDVEVEKWQEFVVHYQNMHSELATKQAEETVENTTPTAAVAIVDGYRNMRSALELDAERRGMNMDTDTSFKAEFLDDDYHDVTASDEGGEHDDEKEHLKDLEHLEDVLPLDNEVPDGDGTKIQLEIEAVTSQRASSLYESDSETSQNEYVETDMEAESNRSAENEDETTDLTTPIYKFHPSFFRRDPRTLRFIELYKEHPCLWNPGNSRFKDLNACKEAYRKMICDLEAKAAMFLNEVSLKASIRKVHLQYNTVHKRVLSGTQKSQSVAFHHYKICSFLQDSEDKKDLYKNEKIQLDFTKKNKLTTELIELYANFPQLYDPTHSEFSSMNSRKQAYESLAVEISVPNVDINSDDIFLAIQNIRQWYYKSTKHAINAGNEAEQFYLKFCRFLPPKMFKQRLVCEICHTVTSSDHVLQSHIFKAHNIGELPFKCTLCDRSFVGRCELANHKQRVHIGKTHQCGHCERSFAVKSDLQLHVRTHTGHKPYVCELCGKAFRLKSQMNLHVTAIHTKVRAFKCTMCPKDFVKKVDLSDHIKSHLNIRDKICNICGKGFTSCHSLIRHRQIHSEVKKFVCKLCDARFSQFVGLNSHMKRTHNIVRNNLQKATDSVEREN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00581006;
90% Identity: iTF_00471857; iTF_00481068; iTF_00484633;
80% Identity: -