Basic Information

Gene Symbol
pita
Assembly
GCA_035041765.1
Location
JAWNKY010000899.1:2227301-2229295[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5.9 4.9e+02 1.7 0.2 1 14 4 17 4 21 0.84
2 11 0.00044 0.036 14.7 0.1 1 23 226 248 226 248 0.97
3 11 2.1e-06 0.00017 22.0 1.6 1 23 254 276 254 276 0.97
4 11 4.6e-06 0.00038 20.9 1.3 1 23 282 304 282 304 0.97
5 11 0.031 2.6 8.9 0.7 1 23 310 332 310 332 0.96
6 11 6.3e-05 0.0052 17.3 0.4 1 23 338 360 338 360 0.95
7 11 8e-05 0.0066 17.0 0.2 1 23 366 388 366 388 0.94
8 11 4.5e-05 0.0038 17.8 5.4 1 23 394 416 394 416 0.98
9 11 6.8 5.6e+02 1.5 2.6 1 23 424 446 424 446 0.86
10 11 0.064 5.3 7.9 0.0 2 23 452 473 451 473 0.97
11 11 0.047 3.9 8.3 0.2 1 23 479 502 479 502 0.92

Sequence Information

Coding Sequence
ATGCCCAGCTATATTTGCCTGGACTGCCACTTGCTGTTCGAGCACAGCTACCGCTTTATGCAGATGTGCAAGCGGGCTGAGACAGCTCTCCGGCAGTTTCCGCTGACAGGGACTCTTCCAGCACCGCTGGCAAAACCACGTCCTCCGACAAAGACTCCTGTGGTCGCACGGAAGGAGGCTACAGGCTCTGAACGACAGCCCAAGAAACTGCTGAACACCCTGGCCAATTCAAAGACTGTGATCATCGAAGATGTCCAGGTCTTGGAGACCAGCTTTTTGGCTAAAAAGCTGGCCGCCACAACAGCTACAAGTTCCAAGTCCTATCAGATGAAGGTGGAGAATAACCAAGAGTTGTCCATGGACGATGTCCAGAATATGATGGAGGATATGGCCAATGAACTGGATGAACAAATTTCGCCACCACAACCAGAAGCTCCGTCGACACCCGTTCAGAAGTTGCCAATGAAACCGAAGGTTCTGAACAAGCCCTCCGTTCGGATATTGAATAAGGGGGCCATCGTTGCTGCGGAGCCCGAACTGGCCACGACCCAGATCAAACGTGGACGGGACGGCAATGTGGCAATTGTCACGGAAATAATAGACCCAAATACTAGTGTACCCAGTGCCCCCAGTGAGGATGCCACTAAGGACGCTGCCCTCGTTGCGACCAATGTTTTTCCCTGTCCAGACTGCGAGCGCTCCTTCCCCCTTCTGCAGCTGCTCGAGATCCATCGCCTGAACCATACACGCGCTCGAAGCTTCCAGTGCGGCGACTGCGACAAGGCCTTCTTCTCCAAGTACGATCTGCAGAAGCACAGATTCATTCACACCGGGGAGAAGCCCTTCGCCTGTAGCGTCTGCGACAAGGCCTTCACGCGACGGGCCCTGCTCCATCGTCACGAGAACTCGCACACGGACATTCCCAAGTTCATATGCGTGCACTGCGAGAAGCCCTTCCTATCGCGCGAGGATATGATGAAGCATGCCGAGCGCCACACCAAGTCGCGTCCCTTCCGGTGCACCATGTGCAACAAGGCATTTGCATTTAAGCAGGGCCTAGAGCGGCACGAGGTCGTTCACAGCGTGGATCTGCCCTTCCCCTGCGAGCACTGCCCAAGCAGCTTTGTCACTGCCAGCAAGCTTGCTCGTCATCTGGTGGCCCATGCGGGAAAGCGAGCCTACCCCTGCAAGTACTGCTCCAAATCGTATATTCTCTCCCACCATCTGTCCCGGCACCTGCGCATGCACAAGCAAGATGCGGGGGCCTCGTTTGTCTGCAGCATCTGCAAGGAGTCACACCAGAGCTTCCACAGTCTCATAGAGCACTCGGTCCGCCATGCGAACGCGTCTCTAAAGTGCCCGTTGTGTAATGAAAAGATCAATGATATCGGTGCGGTGGAGGAACACATGACAACGCACAAGGAGGGCGAGAGATTTGCCTGCGAATTTTGCGACTTGATCTTCCTCAGCTCAGATAGACTGCAGAAACACATCGAGGATGAGCATGTTTTGGACATGGACATGTATCAGAATGATGGGGACAGGGTGTCGAACCAGAGCGATGCGGAGCCAGATATCGTTGTAAATGGCGCTGATCTCGACGAGGAAGAGCAGAAATATTTGCTGCAGGAATTGCTACGCGACGAACCCATGGGTGATTCGTCATCTCCACCGCAACCTGTGAAAAAGCGCAAAGTGGATCCACCAAAGGAGAAGCCTGATGCGGACACCCAAGTCATTGTTTTTCCGAAACGTACACGGCAGGCACGGATTGCAGATCTCGTAAATTTAGATCAACCCGAGAGTTCGCAAAAGTCCAGACAACaggctactgctgctgcgactAGGAAGAGTCCTGTGGCTCCAACCAAAAGGGGACGTTTGCAGATCAAAAACGGGAATTCATCGAAAAGTTCTAGGCAATAA
Protein Sequence
MPSYICLDCHLLFEHSYRFMQMCKRAETALRQFPLTGTLPAPLAKPRPPTKTPVVARKEATGSERQPKKLLNTLANSKTVIIEDVQVLETSFLAKKLAATTATSSKSYQMKVENNQELSMDDVQNMMEDMANELDEQISPPQPEAPSTPVQKLPMKPKVLNKPSVRILNKGAIVAAEPELATTQIKRGRDGNVAIVTEIIDPNTSVPSAPSEDATKDAALVATNVFPCPDCERSFPLLQLLEIHRLNHTRARSFQCGDCDKAFFSKYDLQKHRFIHTGEKPFACSVCDKAFTRRALLHRHENSHTDIPKFICVHCEKPFLSREDMMKHAERHTKSRPFRCTMCNKAFAFKQGLERHEVVHSVDLPFPCEHCPSSFVTASKLARHLVAHAGKRAYPCKYCSKSYILSHHLSRHLRMHKQDAGASFVCSICKESHQSFHSLIEHSVRHANASLKCPLCNEKINDIGAVEEHMTTHKEGERFACEFCDLIFLSSDRLQKHIEDEHVLDMDMYQNDGDRVSNQSDAEPDIVVNGADLDEEEQKYLLQELLRDEPMGDSSSPPQPVKKRKVDPPKEKPDADTQVIVFPKRTRQARIADLVNLDQPESSQKSRQQATAAATRKSPVAPTKRGRLQIKNGNSSKSSRQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00575037;
90% Identity
iTF_00536238;
80% Identity
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