Basic Information

Insect: Drosophila aldrichi
Gene Symbol: -
Assembly: GCA_035045965.1
Location: JAWNOM010000110.1:255448-256404[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.3e-06 9.5e-05 22.7 0.2 3 23 99 119 98 119 0.97

2 7 3.4e-05 0.0025 18.2 0.8 1 23 125 147 125 147 0.95

3 7 1.6e-06 0.00012 22.4 0.2 1 23 153 175 153 175 0.98

4 7 5.2 3.8e+02 1.9 4.8 5 23 187 205 183 206 0.87

5 7 2.1e-06 0.00015 22.0 1.7 1 23 236 258 236 258 0.98

6 7 6.8e-05 0.005 17.3 1.7 3 23 266 288 264 288 0.88

7 7 0.0005 0.037 14.5 4.8 1 23 294 316 294 316 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.3e-06	9.5e-05	22.7	0.2	3	23	99	119	98	119	0.97
2	7	3.4e-05	0.0025	18.2	0.8	1	23	125	147	125	147	0.95
3	7	1.6e-06	0.00012	22.4	0.2	1	23	153	175	153	175	0.98
4	7	5.2	3.8e+02	1.9	4.8	5	23	187	205	183	206	0.87
5	7	2.1e-06	0.00015	22.0	1.7	1	23	236	258	236	258	0.98
6	7	6.8e-05	0.005	17.3	1.7	3	23	266	288	264	288	0.88
7	7	0.0005	0.037	14.5	4.8	1	23	294	316	294	316	0.98

Sequence Information

Coding Sequence: ATGCGACAGCCGGAACAGCAGTTGGACCGTGAGCTGGAGCCAGATGACAGCTACGACTCCTGCCTGACCGAAGATGTGCAGCTGTTCGGCCAACTGGATGACCTGGATGCCAGCCgtgagctgcagttgctgccctCAGCAGCCGAACTGgacctgctgcagctggttaGTGGAGTTAACGATGCTGCATTTCAACCGATTCTTACGCACGACGACTCttcgcagccgccgccgcagccgaTTAAGCCAAAGTCGAAacgcgccacgcccaccaaacGACAAGCGAACAACATTTGTGATCTGTGCGGGCGCAGCTTCAGCGATGCGTACGGCCTACGCATCCACCGGATGACGCACACGGACGAGCGGCCGCACGTGTGTGAGGTGTGCGGTAAGGGATTCCGGCAACTGAACAAGCTGCGCATCCATTCGGTCACGCACACGGACAAGCGGCCGTACGAGTGCGATATATGCGGCAAGGGATTTCGCTTCGCCAACTATTTGGCAGTGCATCGGCGACTGCACACGGGCGAAAAGCCCTACGGCTGCAGCGAGCCCAGCTGCGACATGTCCTTTCACTCCATACATGCCCGACGCATGCACATGAAGCTGCAtcatggcagcagcagcaccaacagcaagaCTGTGGAGACAGATAATCAGAATGAGGACATTGATCAGGTTGATTCGACAGCATCGCTGAGCTTCACCTGTCCCATTTGCGGACGCGTGCTAACGGACCAATGCTATTTGAATACGCATTTGAAGCGCCATTACAACCAGCGCGATTTCGCCTGCCTGCATCCGGGCTGTGGCAAGCGCTTCTTTAGCTCCTCGGAGCTAAACCATCATCAGATTGCGCACACGCGCCTTCGTCCATTTCGATGCTCGCTGTGCGGATCGTGCTTTCTGCGCAAATCGAATTACAAGCAACATTTGAAGATTCACTGCGAttga
Protein Sequence: MRQPEQQLDRELEPDDSYDSCLTEDVQLFGQLDDLDASRELQLLPSAAELDLLQLVSGVNDAAFQPILTHDDSSQPPPQPIKPKSKRATPTKRQANNICDLCGRSFSDAYGLRIHRMTHTDERPHVCEVCGKGFRQLNKLRIHSVTHTDKRPYECDICGKGFRFANYLAVHRRLHTGEKPYGCSEPSCDMSFHSIHARRMHMKLHHGSSSTNSKTVETDNQNEDIDQVDSTASLSFTCPICGRVLTDQCYLNTHLKRHYNQRDFACLHPGCGKRFFSSSELNHHQIAHTRLRPFRCSLCGSCFLRKSNYKQHLKIHCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549730;
90% Identity: iTF_00540566;
80% Identity: -