Basic Information

Insect: Drosophila albomicans
Gene Symbol: -
Assembly: GCA_009650485.1
Location: NC:14325427-14329281[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 3.8e-06 0.00023 21.0 0.8 1 23 222 244 222 244 0.99

2 6 1.4e-05 0.00083 19.3 2.3 1 23 250 272 250 272 0.98

3 6 2.8e-06 0.00017 21.5 2.9 1 23 428 450 428 450 0.98

4 6 4.4e-05 0.0026 17.7 5.1 1 23 456 478 456 478 0.98

5 6 0.11 6.7 7.0 3.4 1 23 484 506 484 506 0.98

6 6 0.0035 0.21 11.7 1.9 2 23 539 560 538 560 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	3.8e-06	0.00023	21.0	0.8	1	23	222	244	222	244	0.99
2	6	1.4e-05	0.00083	19.3	2.3	1	23	250	272	250	272	0.98
3	6	2.8e-06	0.00017	21.5	2.9	1	23	428	450	428	450	0.98
4	6	4.4e-05	0.0026	17.7	5.1	1	23	456	478	456	478	0.98
5	6	0.11	6.7	7.0	3.4	1	23	484	506	484	506	0.98
6	6	0.0035	0.21	11.7	1.9	2	23	539	560	538	560	0.96

Sequence Information

Coding Sequence: ATGTACTGCGGCAagAGCATGGAGCTTTCGTCCGCCGGCTGCGCTGATTGCTGCAGCGACTGCACCCCCGTCCCACCCGCTTGCTGTGCTACGTCCGCCAGCTGCTGCGAAGAAGCTGCCTGCTGTGAAACGAATTGCCAGCTGCTGCCGAGCGAACAGGCGATCAGCTATGAATATCACGAGCCCGAAGAGAATTTTGTGTCGATTGATGATGCGAAGATTAAAAGCTTGCTGCTCAAGAttggacaacagcagcagcaacaacgacaacaattaCAGCGCGAATTGCAGCAAGAAAGGGAAccacagcggcaacaacaacaacagcagcagcaaccgatTATTGAGCTATTGGATGATGATGAGACTGCAATTCGATGCTCACCTGATATACAGTTGATTCCCAAGCCCGTGGAACAACATCGCATTGTGGCACGCATTGAGCTGAGCGATAGTGAGTGCGATGAGGAAGAGCAGGAGACAATAGCTGAGAAGGAGTTGCCACTAAGCTGTGAACTGCGATCGAGTCCGGCTCACATTATCGTGCTTCAGTCGGATGATGAGGAGCAGACGAATCTTTTGCAGCCACTGCCTCCAAAGGTTGAAACTGCAACAAAGAAGAGACCCACGAGACCTTATGTGAAGCGACGGGGTCGCAATTTCTATCAGTGCCAAGCGTGTGGCAAGAAAGTGCAGTCCAACTACAATTTGCGGCGTCACATGATGATACACACAGgGGAACGTCCCTTTCCATGCGACTTGTGCGAGCGTCGCTTTCGAGAGTTCAGCGATCTGAAGAAGCATCGACGTCGTCACATGAACGATCCGCGCTATATCTGCATGATCTGTCACTTGTATCCACCGATGGAGCAGGACTCCACGCGATGTGTGGAATGCGAGGGCAAGAATCTGTTGCTCAATCCTCAGGACTGTGAAGATGGGCCAGAAGTTGTGAATGCTGTGGACaaagacgatgacgacgatgaagAGCCTGAaccagaagcagaagcagagccAGAGCAGGCACAGGAAACAGATCAAGAGGAAGGAGATGATACGTTGATGTCGCCTCCACCAGTTGCCACAACATTAATTGCCCCGCCGTCGCCCTTGCTGGTTGTCACCTTGGTGCCTTCACTGCCAACGCCACCTCCCAGTGCATCGGTAACAATTTCGAGCATTCCGCGGAGCTACAGCAGCGCCAACTCTTCCTCGTCGCTGAGCAACGAAACAACTTTAGTCTCGCAGTTGCCAGCGCGAACTTCTCGCAATCGTCGTTCCTATCCCTGTCCGCTGTGTCATCGTCCATTTGGCACGCGGCACAATCTCAAGCGACACTACATGATACACACTGGAGAGAAACCCTTCAGTTGCACCAAGTGCCGGAAGCCGTTTCGGGAGTGCTCCACGCTCAAGAAGCATATGGTGACCCATGTGCGTGAACGCTGGTATAAATGCCTGAGATGTCCAGCCAAGTATAAGGATTATTTGCATTATACGTCGCACAAGGCTACACATGGCAGTGAGACACCACTGGAGTTGGGATCTGTTGCTCAACATAGAGTGCGATCCTCGGACAGCGACGATGGGGAAAGCTCTCTGGAGGATTGGCTGGAATGCTGTGAATGCCAGAGTCGATTTACACGCCTGGATGCGTATACGGCGCATCTTAAGCAACACGATTTGGAACTGTATGGCATGAGTGTGGATGATGTGGAGGATGACGATCAGGAAGTCGAAGTGGCCTAG
Protein Sequence: MYCGKSMELSSAGCADCCSDCTPVPPACCATSASCCEEAACCETNCQLLPSEQAISYEYHEPEENFVSIDDAKIKSLLLKIGQQQQQQRQQLQRELQQEREPQRQQQQQQQQPIIELLDDDETAIRCSPDIQLIPKPVEQHRIVARIELSDSECDEEEQETIAEKELPLSCELRSSPAHIIVLQSDDEEQTNLLQPLPPKVETATKKRPTRPYVKRRGRNFYQCQACGKKVQSNYNLRRHMMIHTGERPFPCDLCERRFREFSDLKKHRRRHMNDPRYICMICHLYPPMEQDSTRCVECEGKNLLLNPQDCEDGPEVVNAVDKDDDDDEEPEPEAEAEPEQAQETDQEEGDDTLMSPPPVATTLIAPPSPLLVVTLVPSLPTPPPSASVTISSIPRSYSSANSSSSLSNETTLVSQLPARTSRNRRSYPCPLCHRPFGTRHNLKRHYMIHTGEKPFSCTKCRKPFRECSTLKKHMVTHVRERWYKCLRCPAKYKDYLHYTSHKATHGSETPLELGSVAQHRVRSSDSDDGESSLEDWLECCECQSRFTRLDAYTAHLKQHDLELYGMSVDDVEDDDQEVEVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00589791;
90% Identity: iTF_00553977;
80% Identity: -