Basic Information

Insect: Drosophila albomicans
Gene Symbol: -
Assembly: GCA_009650485.1
Location: NC:38946651-38948851[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0011 0.066 13.3 0.4 2 23 396 418 395 418 0.94

2 7 0.13 8 6.7 8.4 1 23 426 449 426 449 0.96

3 7 1.1e-07 6.5e-06 25.9 1.0 1 23 454 476 454 476 0.98

4 7 4.6e-05 0.0027 17.6 0.5 1 23 485 508 485 508 0.91

5 7 0.00037 0.022 14.8 0.5 1 23 514 536 514 536 0.98

6 7 1.6e-05 0.00095 19.1 1.1 2 23 543 564 542 564 0.96

7 7 0.00044 0.026 14.5 0.7 2 23 570 592 569 592 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0011	0.066	13.3	0.4	2	23	396	418	395	418	0.94
2	7	0.13	8	6.7	8.4	1	23	426	449	426	449	0.96
3	7	1.1e-07	6.5e-06	25.9	1.0	1	23	454	476	454	476	0.98
4	7	4.6e-05	0.0027	17.6	0.5	1	23	485	508	485	508	0.91
5	7	0.00037	0.022	14.8	0.5	1	23	514	536	514	536	0.98
6	7	1.6e-05	0.00095	19.1	1.1	2	23	543	564	542	564	0.96
7	7	0.00044	0.026	14.5	0.7	2	23	570	592	569	592	0.96

Sequence Information

Coding Sequence: ATGGTGGTTTGTGGAACTCTTCTCGTTCGCAACAATTACAAAGAGTTCTTTTTGAGCTGCTCGCATTGCCAACACGATTGCAACGTTGAAGTAAATCTGGAAAAGTGGCAAGAGTTCATTTTACACATTAGAAATGCACACAAAGTGCGTTTCGAAGATGATGATAAAATATCATGCAGTAGAACCGTCGAGCATAAAACTCAATCAATGCCAAACGAAGACAGTAGTGAAACTGAAATCAATGATAATGATGTCGAGTTTGAAGAGGATGATGACAATAAGGATTGTTTAGCCGAGGAAGCATTTGTTGATTTGCCAAGCGGTCTGACTTGCGAAGATGAggacgataacgataacgacaGCGAGCTCAATACTGATGATGAGatgtTAGAGAAATGCCCTATTATGGCCGTGTCTTGCCTTATGGATGATAATTCTCTAACTGAGCAGAGCGGCGAAAAGAAACACTTTGCGCCAACAGTAAAATTCAATCCTACATTTTATCGCCGCAATCCGCGAATCACACAGTTTATTGAACTATATAAGGGACATCCGTGTCTATGGGATCCCAAAAATGCTGCATATAAAAACAAGGAAAAACGCAGTGCAGCATACGCCAACTTAATTGATCAGCTAAAAGCCAGTGTAAATGTTCATCTCACACATTACAAGCTGAAGAAATGCATATCGAGTCTTCATAGTCAATATGCAGTGATAACACGTCAAAAACGTACAAAGAAATTGACGAAGTTACCATTGTATTATCATGAAATGTATAGTTTCCTAGGGAAACGCTGTGATCTTGATGATGCGGAAAGCGACGAGGACAGTGACGAGAATAAAATTAAGCTATCGTTTATTGAATCAAACCATTTGACAACATACTTCATAGAGTTGTATGCTAAGTTTCCGCAATTATACGATTCAACAAACAAGGAGTTCGCTAATCTTCAGGAACGAAAAAGAGCATACATCGAAATGACTGATCTGCTCACCAAGGAGATTCCACTTGGCATCATTACCCACTATGATGTTTATGACAGTGTGCTCTATTTGCGTCAATGGTATTCCCGCAAAATCAAAGGACTAACAGAGACCCAAACAGTTGGATTGTTGAGGGCCGAAAAACATTACATTGAGACATGCAAGGGCTTCCTGAAAACGACAACATTCCGCCAGAAAATTCCATGTGACGTCTGTCAAAATAGCTTCAGCACCGATCACGCTCTACAGGCACATCAGTTTCGTGCTCATAAGGTTGGCGATGGCGGCTGGTTTAAGTGCACGCTGTGCGAGAATCATTTCGAGCGTCGTTGTCATTTACAGCAGCATAATCAACGTGTTCACATGGGCAAAACATTTAACTGCAGTTTATGTGATCGCAGCTTCTCATTTGCCAGTCAACTGAGTGCACATATGCGTACCCATGATGATAGCCACATAGCCAAACCATTTGTCTGCGAATTCTGTGGTAAATCGTTTaagcaaaaaattcaaatgagCAACCATGTGACAGCAGTTCATACCAAAATTCGGGCATTTAAATGCGCTATGTGCCCCAAGGATTTTCTAACGAAACGGGACCTCAAAGATCACATTAAAGCGCATCTAAACATACGAGACAAGGTGTGCGAAATTTGTCAAAAGTCGTTCACCAACGCCAATGCACTCGTGAAGCATCGCCACATCCATCGGGAGAAAACACTTCAGTGCAGTCTCTGCAATACCAAGTTCTCCGAGCGTGTGAGTCTTGGTGTGCACATGAAGCGTACTCACAAAATCATTCGGAATAATGCGAAAGCTCCCGAGGCACCGGAAACCACActgcaaacacaaacattCCCAAAAGCcgaaaataattcaaataaataa
Protein Sequence: MVVCGTLLVRNNYKEFFLSCSHCQHDCNVEVNLEKWQEFILHIRNAHKVRFEDDDKISCSRTVEHKTQSMPNEDSSETEINDNDVEFEEDDDNKDCLAEEAFVDLPSGLTCEDEDDNDNDSELNTDDEMLEKCPIMAVSCLMDDNSLTEQSGEKKHFAPTVKFNPTFYRRNPRITQFIELYKGHPCLWDPKNAAYKNKEKRSAAYANLIDQLKASVNVHLTHYKLKKCISSLHSQYAVITRQKRTKKLTKLPLYYHEMYSFLGKRCDLDDAESDEDSDENKIKLSFIESNHLTTYFIELYAKFPQLYDSTNKEFANLQERKRAYIEMTDLLTKEIPLGIITHYDVYDSVLYLRQWYSRKIKGLTETQTVGLLRAEKHYIETCKGFLKTTTFRQKIPCDVCQNSFSTDHALQAHQFRAHKVGDGGWFKCTLCENHFERRCHLQQHNQRVHMGKTFNCSLCDRSFSFASQLSAHMRTHDDSHIAKPFVCEFCGKSFKQKIQMSNHVTAVHTKIRAFKCAMCPKDFLTKRDLKDHIKAHLNIRDKVCEICQKSFTNANALVKHRHIHREKTLQCSLCNTKFSERVSLGVHMKRTHKIIRNNAKAPEAPETTLQTQTFPKAENNSNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00583949;
90% Identity: iTF_00562696;
80% Identity: -