Basic Information

Insect: Drosophila albomicans
Gene Symbol: RREB1
Assembly: GCA_009650485.1
Location: NC:3070199-3083702[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.026 1.6 9.0 0.8 1 21 33 53 33 55 0.93

2 13 0.00024 0.015 15.3 0.2 1 23 65 87 65 87 0.98

3 13 5.9e-05 0.0035 17.3 7.3 1 23 93 115 93 115 0.98

4 13 0.5 30 4.9 2.6 2 20 344 362 344 364 0.93

5 13 0.0061 0.37 10.9 0.1 1 23 522 544 522 544 0.97

6 13 9e-06 0.00054 19.9 0.7 1 23 554 576 554 576 0.99

7 13 0.00061 0.036 14.1 2.0 1 23 582 605 582 605 0.97

8 13 0.0022 0.13 12.4 2.0 1 23 857 880 857 880 0.95

9 13 6.3e-05 0.0038 17.2 0.3 2 23 1229 1250 1228 1250 0.97

10 13 0.11 6.3 7.1 6.3 1 23 1256 1279 1256 1279 0.97

11 13 1.4 83 3.5 3.8 1 23 1415 1438 1415 1438 0.85

12 13 0.0062 0.37 10.9 0.5 3 23 1496 1516 1494 1516 0.96

13 13 0.001 0.061 13.4 4.8 1 23 1522 1544 1522 1544 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.026	1.6	9.0	0.8	1	21	33	53	33	55	0.93
2	13	0.00024	0.015	15.3	0.2	1	23	65	87	65	87	0.98
3	13	5.9e-05	0.0035	17.3	7.3	1	23	93	115	93	115	0.98
4	13	0.5	30	4.9	2.6	2	20	344	362	344	364	0.93
5	13	0.0061	0.37	10.9	0.1	1	23	522	544	522	544	0.97
6	13	9e-06	0.00054	19.9	0.7	1	23	554	576	554	576	0.99
7	13	0.00061	0.036	14.1	2.0	1	23	582	605	582	605	0.97
8	13	0.0022	0.13	12.4	2.0	1	23	857	880	857	880	0.95
9	13	6.3e-05	0.0038	17.2	0.3	2	23	1229	1250	1228	1250	0.97
10	13	0.11	6.3	7.1	6.3	1	23	1256	1279	1256	1279	0.97
11	13	1.4	83	3.5	3.8	1	23	1415	1438	1415	1438	0.85
12	13	0.0062	0.37	10.9	0.5	3	23	1496	1516	1494	1516	0.96
13	13	0.001	0.061	13.4	4.8	1	23	1522	1544	1522	1544	0.99

Sequence Information

Coding Sequence: atgTCGTCGAGCAGCTCGGGCGGTTCATCGCCTCAAGGCGGACTGAGCTTGTCGAGTGCCGAGTCCGGCATCGGAGCTGGCGATGAGCACATGAAATACTTGTGCCCCATCTGCGAGGTTGTTTCGGCCACGCCCCACGAATTCACCAATCACATACGCTGCCACAACTATGCCAACGGCGACACCGAGAACTTCACCTGCCGCATCTGCTCAAAGGTGCTGTCGTCGGCCTCGTCGCTGGATCGTCACGTGCTGGTGCACACTGGGGAGCGACCCTTCAACTGCCGCTATTGCCACCTGACATTCACAACGAACGGCAACATGCATCGTCACATGCGCACGCAcaaacagcatcagcaacaatcgcagtcacagtcgcagtcacagtcacagcagcagcaacagtcacagTCGCAACAGCCATccgcacagcagcagcaacagttgcactcacagcagcagccacatcaGCGACGTCAGCAACATGCGGCAACAGCTGCAAGTGGAGCGCAGATGTCTGCGACATCAGCGGGACGAGCGGAGAGCTATGAAAGCGATGCCAGCTGCTCGACGGATGTTTCGAGTGCAGCgagtcacagcagcagcaacaacagcagccacagcagccaaCGTTCcctccacaacaacaacaacaacaacaataacagcaagttgaacaacaacaatgagttAGACTTGGAGTTGGACAACAAACAGCGACGCCACAAgctcatcaacatcaacaacaacaacattgccgAAGATCAAGATGAAGCGATGGAGCAACCACAGCTGAAATCCGAAGCCGAACACGATGAGGATGAAGATGAGAATGTGGACAGCGAATCGGAAGTGACACAAGTCATCACAAGCACTCCCGATGTGGCCACATTGCTGGCGAGTTCCTCCCGATCGGGGGGCACAACACCGACGCAGTTGCTCAGTTGTCCCGCCTGTGCGGCAGATGATTTCGAATCGTTGCCTGCACTCTGCCAGCATCTGGATGCCCAGCATGCGGATATACCGGCGAAGTGTCGCGAATGTGATGTGATCTTTGGCAGCCATCGTCAGCTGCAAACGCACAGCTGTCGCATGCAAATGTTGCCGCTGCTCGGTGCCAGCTCATCCCCGTTGCACAAGCAGGaacacgacgacgacgacgtcggaGATGAGGACGTTGACGATGAGGAAGCTGCtcacgatgacgatgatgatgcggAGGCAACAGCGCAGCGACACAGCGAACGCAATGACTTCTTTCAGCAACTGTATCTCAAGGGTAAATCCTCAGCgttggcacaacaacaacaacagccctCGTTGCCCTCCCCGATCAAACACGAACCCCCGGCGAATGCGAATGATAGTCGACAGGATTTGGCGGACATTCAAAGCATACTGAACATGACCAGCTCCAGTTGCACCTCGAGTTTTCTGCGCAACTTTGAGCAATCGGTGAACACTCCCTGCTCCAGTCAATACAGCCTGGATGGTCGGGATGGTGATGAGGAGGCGCAGGATGCATTCACCAGCGAATTCCGACGCATGAAACTCCGCGGCGAATTCCCCTGCAAGCTCTGCACCGCTGTTTTTCCCAATCTCCGTGCGCTCAAAGGTCATAATCGTGTCCATCTCGCTGCCGTGGGTCCTGCAGGTCCGTTCCGTTGCAACATGTGTCCCTATGCGGTGTGCGATAAAGCAGCTCTGGTGCGTCACATGCGCACCCACAATGGGGATCGTCCGTATGAGTGCGCCGTGTGCAATTATGCGTTCACCACGAAGGCGAATTGTGAGCGGCATTTGCGCAATCGTCATGGCAAAACGAGTCGCGAGGAGGTGAAGCGTGCCATACTCTATCATCCCGCCGAGGATGCCAGCTGCGAGGATGCCAAGTCCTCCGGACAACAGGAGCTCGCTGAGCTCAGCTATCGCTCGACAACGCCGCCGCTACCGACGACATCGGAGTCAACGAGCTCTCAGCTGAAGCACATGTTACTCTCGGCCGAAGCACCCAAGATACAGGTGAAGAGTCTCGATCAGTTGGTGGAGAAACCAACGGCAGCCATGGATCTCAACATGGATGTGCTCGATCTGAGCAAGAAGCCAACGTTGGCTCAGGAGTTGCTCGAGCAGCGCGAACGTGAACGGGAGCGGGAACGGGAGCGAGAACGTGAACGGGAGCGTGAGCGTGAACAcgaattgctgctgcaacagcaacaacaacagcagcagcagcaacaactcttTGGCGCCGGAGAAGCAGCCACACAGTATATGCAGCAATTGTTTAGGAATCTCATGTTCCAGCAATCCCCGGGATTTCCCTTCTTCGGTTTCATGGCGCCGCctaacgcagcagcagcagcagcagccgcagctgcagccacACCTGATAAGTCTAGCTccacagcagcaggagcagccaCAACTGGCACGCCCCTTGGACTGCCACTCCCCCTACCGAATGTGGGCGTTCCGGTGCCAGCCGGCGGACCCGTCAAGATGGTCATCAAGAACGGAGTGCTGATGCCCAAGCAGAAGCAGCGTCGCTATCGCACCGAACGTCCCTTTGCCTGCGAGCATTGCTCGGCGCGTTTCACGCTCCGCTCCAACATGGAGCGCCATGTGAAGCAACAGCATCCGCAGTTCTACGCTCAGCGTCAGCGCAGCGGACATCATGTGATGCGCGGACGTGCCGCGTCCTCAAGtgccgcagccgcagcagcagcagcggcggcagcagcagccgcagcagccaTGTCCAATCtaagtcaacagcagcagcagcagcaacaacattcgcATCATCCACATCATCCGCACATCTCGGATCAGGTGAAGTACGCGATACTCGCACAGCAGCTGAAGGCGCGCAAGGACACGGATCTGTTGCAGCAGGCGCTCGCTCATGGCTCCAGCAGCGTGGTTGGTGGTGTTGCCAACGCCAGCAATCCGCTGTTGCACTTTGGCTACAAAGCTGCGAGCAGCAATGGTCAGAGCAATGGACATCATGGTGCGACGCtcaacgatgacgatgaacCGCCGAAGTTGATCATCGACGAGGACGATGAGGATGAGTTCGATGAGGTggaggatgaggatgatgagGACGATGTCGAGGAGGAGTTAGAtgagcaggagcaacagccacagccaccgCAACAACAGCTGGAGGATCAGGCTGAATCCGAGCTCATCGAGGAGTCGACGCAACCCCGCAGCTCCACGCCCATTGAGGCAGCCAAAAAGGTGGCCGAGACCATACTCGAGCAGGCCATCAAGGCAGGCAAATCCGATACAGCGGCGCTCTCCAAGACTCCAGTCTCTGCTACTCCCACCCCCTCAACACCTCCCGCACCGCATTCGATGAAAACCCTAATAGCCCAAGCCGAGTCTGTGGCCAAATCGTTGAAGGAAGTGGCCAGCTCTCCGTTCAAGGATGAATCTCAGGATCTGGTGCCGGTGTCGAAGCTGGTCGATAATGCCACCAGCAATCAGGTGTCGTTCAACAGCTACTTTCGTCCCAGCGATGTGGCCAATCACATGGAGCAGAGCGATGAGGAGGGTTTAGTTGCCTCCGGTAGCGCCTCCGAAAGCAACAATTCCGGCACCGAAGATgtaaccagcagcagcagcaatgaaCCGAAAAAGAAGTCCGCCTACAGCTTGGCTCCGAATCGTGTCAGTTGCCCGTATTGCCAACGCATGTTCCCCTGGAGCAGCTCGTTGCGTCGCCACATCCTCACACACACCGGCCAGAAGCCGTTCAAGTGCTCGCATTGTCCGCTGCTCTTCACCACCAAGAGCAACTGTGATCGCCATCTGTTGCGCAAGCACGGCAACGTCGAGTCAGCAATGAGCGTCTACGTCCCCACCGAGGATGTCAGCGAACCGATACCGGTGCCCAAGTCCGTTGAGGAGATCGAATTGGAGGAGCAGCGACGTCGCAAGGCTGCCGAAATCGAGTTGgaacgtgaacgtgaacgCGAGCGGGAATTGGAACGTGAGCGGGAACGGGAACGCGAAAGGGAGCGTGAACAGGAACTGGAGCGTGAACGGGAGCGACGTCAACTGGAGCAGGAGcgtgaacagcagcagctaatacaacagctggcagcagcagctcagctcagtcAACAAATggccgcagcggcagcagcagccgccgtcCTCAATGGGGAGAATGCAAGCTCAAATGCTGCAGCTCCGGGTGCAGGCGAGGCACAAGGCAGCGATTTGCCCTACAAGTGTCATCTGTGCGAATATTCGTTTGCGGAGCGTTTGCAGTGCTTGGATCATATCAAGCAGCAGCATGCACAGGAATTTGCTCTGCTCCTCGCCAAGGGCGCCATCGAAACCGAGAGCGGagaccaacaacagcaacagctgcctcCACCTCCTGCTCCCGCTTCCGATGAGGAAAACAGCACCACAAATCCGTCGTCACGCAACAAATATCCCGACTACAGCAACCGCAAGGTGATCTGTGCCTTTTGCGTCCGTCGCTTCTGGTCCACCGAGGATCTGCGTCGTCACATGCGAACCCACTCGGGAGAGCGTCCGTTTCAGTGCGACATCTGCCTGCGCAAGTTCACGCTGAAGCACAGCATGTTACGGCACATGAAGAAGCACAGCGGACGCAGTCACAACGGCGAACAGGGACAATCCGATTGTTCCGATGATGAACAGAGCGCTTTGAATAGTCCGCCCAGCACTCCTACGCCCacgcataacaacaacaacaataacaccagtaacaacaacaacaacacttgccacaacaacaacaacaataataacaagcaGAGCTTGCGTCTGCCCAAGTTGCATGAGCTCCTGGACAAGGCGAACGAATGGCGCGAAAGTCATCTCGGTGAGCACAAGGAAAACATCGGTGAGGCCAGCAAACCTTCCTCTGCTGctactgcagctgcagctgcggctgctgccgccgcGGCGGCTGTGGCCAGCGGTGATCTGATTGGCAATCTGCTGGGCATCAGCGATCAGGGCATTCTCAACAAGCTGCTCTCCTCCGCTGACGAAGCAGCCAAGCTTCTGGGCGTCGACAAGTAA
Protein Sequence: MSSSSSGGSSPQGGLSLSSAESGIGAGDEHMKYLCPICEVVSATPHEFTNHIRCHNYANGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCRYCHLTFTTNGNMHRHMRTHKQHQQQSQSQSQSQSQQQQQSQSQQPSAQQQQQLHSQQQPHQRRQQHAATAASGAQMSATSAGRAESYESDASCSTDVSSAASHSSSNNSSHSSQRSLHNNNNNNNNSKLNNNNELDLELDNKQRRHKLININNNNIAEDQDEAMEQPQLKSEAEHDEDEDENVDSESEVTQVITSTPDVATLLASSSRSGGTTPTQLLSCPACAADDFESLPALCQHLDAQHADIPAKCRECDVIFGSHRQLQTHSCRMQMLPLLGASSSPLHKQEHDDDDVGDEDVDDEEAAHDDDDDAEATAQRHSERNDFFQQLYLKGKSSALAQQQQQPSLPSPIKHEPPANANDSRQDLADIQSILNMTSSSCTSSFLRNFEQSVNTPCSSQYSLDGRDGDEEAQDAFTSEFRRMKLRGEFPCKLCTAVFPNLRALKGHNRVHLAAVGPAGPFRCNMCPYAVCDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHGKTSREEVKRAILYHPAEDASCEDAKSSGQQELAELSYRSTTPPLPTTSESTSSQLKHMLLSAEAPKIQVKSLDQLVEKPTAAMDLNMDVLDLSKKPTLAQELLEQREREREREREREREREREREHELLLQQQQQQQQQQQLFGAGEAATQYMQQLFRNLMFQQSPGFPFFGFMAPPNAAAAAAAAAAATPDKSSSTAAGAATTGTPLGLPLPLPNVGVPVPAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHVMRGRAASSSAAAAAAAAAAAAAAAAMSNLSQQQQQQQQHSHHPHHPHISDQVKYAILAQQLKARKDTDLLQQALAHGSSSVVGGVANASNPLLHFGYKAASSNGQSNGHHGATLNDDDEPPKLIIDEDDEDEFDEVEDEDDEDDVEEELDEQEQQPQPPQQQLEDQAESELIEESTQPRSSTPIEAAKKVAETILEQAIKAGKSDTAALSKTPVSATPTPSTPPAPHSMKTLIAQAESVAKSLKEVASSPFKDESQDLVPVSKLVDNATSNQVSFNSYFRPSDVANHMEQSDEEGLVASGSASESNNSGTEDVTSSSSNEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAMSVYVPTEDVSEPIPVPKSVEEIELEEQRRRKAAEIELERERERERELEREREREREREREQELERERERRQLEQEREQQQLIQQLAAAAQLSQQMAAAAAAAAVLNGENASSNAAAPGAGEAQGSDLPYKCHLCEYSFAERLQCLDHIKQQHAQEFALLLAKGAIETESGDQQQQQLPPPPAPASDEENSTTNPSSRNKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGRSHNGEQGQSDCSDDEQSALNSPPSTPTPTHNNNNNNTSNNNNNTCHNNNNNNNKQSLRLPKLHELLDKANEWRESHLGEHKENIGEASKPSSAATAAAAAAAAAAAAVASGDLIGNLLGISDQGILNKLLSSADEAAKLLGVDK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00553919;
90% Identity: iTF_00553919;
80% Identity: -