Dalb008733.1
Basic Information
- Insect
- Drosophila albomicans
- Gene Symbol
- Ouib
- Assembly
- GCA_009650485.1
- Location
- NC:8271143-8274687[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.4e-05 0.0014 18.5 1.6 1 23 206 228 206 228 0.98 2 10 0.14 8.5 6.6 0.1 3 23 236 256 234 256 0.97 3 10 0.032 1.9 8.7 1.0 1 23 262 284 262 284 0.96 4 10 2.1e-06 0.00013 21.8 0.2 1 23 290 312 290 312 0.98 5 10 0.00012 0.0072 16.3 4.9 1 23 318 342 318 342 0.92 6 10 0.0041 0.24 11.5 0.8 1 23 553 575 553 575 0.97 7 10 0.001 0.061 13.4 0.1 1 23 581 603 581 603 0.97 8 10 0.0013 0.079 13.0 1.3 1 23 609 631 609 631 0.98 9 10 3.4e-06 0.0002 21.2 0.6 1 23 637 659 637 659 0.97 10 10 3.3e-06 0.0002 21.2 3.0 1 23 665 689 665 689 0.92
Sequence Information
- Coding Sequence
- ATGCTGCTGAGAATGTGTCGCATCTGCGGAAAAAGCAATGTTTGtgataaaagtaaaaatctATTTGAACCGAGCAACAGGAAGTTACTGGGACACATTCAAATGCTAACTGGATTGCGGTTGAGTGCTTTAGAAAATGCTCCCATctccatttgcttttgctgtcaAGCTGACCTTAAGTTGTCCATGGCTTTTCGGCGGCTTTGCATCAAAACGCAAAAGAAATGGCATCCATCAATTGAAGTCAATGAGGATTCGTCCTTAAGTGAGCAGGAGAGTTTAAGAAAAAGCCCTGTACCAAAAATCCCTCAGAAATGCAATGAGCTATACTTAGACAGCGATTCAGATGAGGAACCACAGCAAACCGTGCAAGTTTTAATTAGAGAAACGAGAATACACAAACATTTGATCAATGATGAAACAGCTCAGGAGCACGATCATCTCGACTTGAATTGGATGCAAGTACATAAAGATATCGAGACCTACGACATAGACGACAACGAAGACATTGAAGACGACGATAGTGATGAAAAACATATTCCTAACCAACAAAATATCGAACATTCCACGCAGCCTCACCAGAAACTCCTAAAAGCGAATCAGGAGACTGCTATCTACATTTGCGAGCTGTGCGGAACACACGTGAAAACAAAAGCCTCTTTTGAGCGCCACATACGCAAACATACCGGAGAACGTCCCTTTGGCTGCGAGAAATGCGAGGCCCGTTTCTTGACGGCAGCTGAACTGCGATCACATGGTCTCACCCACACTGGTGACCGACCGTATCCATGTCGATATTGTGATCGCCGATATGTCAGCTATATGGGCCGACTGAAGCACGAAAGACTTCACACCAATGAGCGTCCATTTGTGTGTACGGAATGCGGAAAGGCTTTCACCAATGCCTACATTCTCAAGAACCATATGCTGGTGCACACGGGTGAACGTCTTTTCAGATGCGAGCTTTGTGATCGTTCCTTTCAGCGTAAAACTCATCTTACCACTCATTTTCGTTCCAACACGCACAAGCTGAACGTCGATAAGCGTCAAGATGCATTATTGCATTTATCTAAAAGATATTTTGTGCACACAATGCTACAAAACATATGTCGCATCTGTGCTATTGACACTAATGAAGTAACCAAACTCTTTGAGAAGAGTGCACGAAAATTGGTGCGCCAAATAAAACTTCTTACCGGTGTTTTTCTGGAGTCCAAACCCGACTTGCCCGATGTGATTTGCAATAGCTGCTTAGAGGATTTGCACTGTGCCATAGAGTTTCGTCGCCGCTGCTTGCTTAACCACAAACGATGGAAGCCCACAAAGTTAATGGAATCCGAGTCTGGAGCATCCACAAGGGTTATTTGTATGCGCCGCAGCACGAGAAGTCGGATGCAATATGTGGAAGATGAAGCGCCATTAAGTCCTGTTGAAGTGCTAATTAAAGTAGAGCAACCAAAATGTAATGCAATTGACGACGACATCGATCATTTGGAGCCCCCAAACCAGACCGAAAATGATAACAGACTTGACCTTACTGTgtcggaggaggaggagctcTATGTGCCACCCACAAAGGGAAAATTACGATCACGCTCACGTCTAATGAAAGCGACAATCTTAAAGCAGCCCCGCACTAAGCAAAAGCTGCCAGTTTTCTTCTGTGATCAGTGTGGAAACAACGTGACGGGAAAATCTGCCTTTGATCGCCATCTGCGCAAACACAGCGGCATTCGACCCTTTAAATGCGAGCAGTGTCCTGCACGTTTTTTCTCAGCCGGCGAGCTTAAAGGTCATCTAGTGATGCACACGGGGGATCGCAACTTTCCCTGTCGTTACTGCGAACGCACCTACGTCAACTATAGTGGTCGACTGCGTCACGAACGAACCCATACCAATGAGCGGCCATTTGCATGTGACCAATGTGGCAAGACTTTCACCAACTCCTACATACTCAAAAACCATATGCTGGTTCATACTGGAGAACGGATGTTTAGATGCGATTTGTGCGATCGCGCATTCTCGCGTCCAACGCACTTAAAAACACATTATCGCTCGAATACCCACAAGCATAATTTGGAGAAATCCAGTGCTGAGCAACTGCAGCCGTTTAAGACGAATGAACTACAAACGACAGCTGATATTGTCTCACTTTATGATTCTAACGAAGATCCACAGGTTCAATTAATAGCTACTGTTGACGTAActtaa
- Protein Sequence
- MLLRMCRICGKSNVCDKSKNLFEPSNRKLLGHIQMLTGLRLSALENAPISICFCCQADLKLSMAFRRLCIKTQKKWHPSIEVNEDSSLSEQESLRKSPVPKIPQKCNELYLDSDSDEEPQQTVQVLIRETRIHKHLINDETAQEHDHLDLNWMQVHKDIETYDIDDNEDIEDDDSDEKHIPNQQNIEHSTQPHQKLLKANQETAIYICELCGTHVKTKASFERHIRKHTGERPFGCEKCEARFLTAAELRSHGLTHTGDRPYPCRYCDRRYVSYMGRLKHERLHTNERPFVCTECGKAFTNAYILKNHMLVHTGERLFRCELCDRSFQRKTHLTTHFRSNTHKLNVDKRQDALLHLSKRYFVHTMLQNICRICAIDTNEVTKLFEKSARKLVRQIKLLTGVFLESKPDLPDVICNSCLEDLHCAIEFRRRCLLNHKRWKPTKLMESESGASTRVICMRRSTRSRMQYVEDEAPLSPVEVLIKVEQPKCNAIDDDIDHLEPPNQTENDNRLDLTVSEEEELYVPPTKGKLRSRSRLMKATILKQPRTKQKLPVFFCDQCGNNVTGKSAFDRHLRKHSGIRPFKCEQCPARFFSAGELKGHLVMHTGDRNFPCRYCERTYVNYSGRLRHERTHTNERPFACDQCGKTFTNSYILKNHMLVHTGERMFRCDLCDRAFSRPTHLKTHYRSNTHKHNLEKSSAEQLQPFKTNELQTTADIVSLYDSNEDPQVQLIATVDVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -