Basic Information

Insect: Drosophila albomicans
Gene Symbol: -
Assembly: GCA_009650485.1
Location: NC:17823425-17826343[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.11 6.6 7.0 3.8 1 23 255 277 255 277 0.97

2 11 5.3e-06 0.00032 20.6 0.4 1 23 283 305 283 305 0.99

3 11 4.6e-05 0.0028 17.6 2.9 1 23 311 334 311 334 0.97

4 11 0.31 18 5.6 3.8 1 20 340 359 340 362 0.95

5 11 0.0075 0.45 10.7 1.7 1 23 368 390 368 390 0.97

6 11 3.5e-05 0.0021 18.0 1.2 1 23 396 418 396 418 0.98

7 11 0.00069 0.041 13.9 0.9 1 23 426 449 426 449 0.94

8 11 0.0016 0.098 12.8 0.7 1 23 455 477 455 477 0.98

9 11 0.0083 0.5 10.5 3.4 1 23 483 505 483 505 0.98

10 11 1.3e-05 0.00079 19.3 0.9 1 23 511 534 511 534 0.96

11 11 9.4e-07 5.6e-05 23.0 2.4 1 23 548 570 548 570 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.11	6.6	7.0	3.8	1	23	255	277	255	277	0.97
2	11	5.3e-06	0.00032	20.6	0.4	1	23	283	305	283	305	0.99
3	11	4.6e-05	0.0028	17.6	2.9	1	23	311	334	311	334	0.97
4	11	0.31	18	5.6	3.8	1	20	340	359	340	362	0.95
5	11	0.0075	0.45	10.7	1.7	1	23	368	390	368	390	0.97
6	11	3.5e-05	0.0021	18.0	1.2	1	23	396	418	396	418	0.98
7	11	0.00069	0.041	13.9	0.9	1	23	426	449	426	449	0.94
8	11	0.0016	0.098	12.8	0.7	1	23	455	477	455	477	0.98
9	11	0.0083	0.5	10.5	3.4	1	23	483	505	483	505	0.98
10	11	1.3e-05	0.00079	19.3	0.9	1	23	511	534	511	534	0.96
11	11	9.4e-07	5.6e-05	23.0	2.4	1	23	548	570	548	570	0.97

Sequence Information

Coding Sequence: ATGCCAAATCGCAGTCGCGACTCGGATTCTGAGGATTTGCAATCCTTTCTCATGAATTTTCACAAGGAGATCGAAGACAATGCTGCAAAGGAAAATGGTAGCGTCGTTGcgtcaaatgcaaatggtgGAGGGgacgacgaagaagaagaagatgctgacaaatatttcatagacGACGAAGGCAATTGCTACATTAAGACGAAGCCTAAAAAGCAGCTGAAGtcgaaaacgaaacaaaaggCGCCTGTAACCTCAACGCCAGCTGCAATTACAGTGCGAGCCAGCGGCTCATCTACATCGAAGGCTATTAATCTGCGGCCTGCCAACTCCAAAGTAGACAGTACTCCACAAAGGACTCCCAAGGTAGTTAACACACGCCCAGGTCCACAGAAAAAGACGCCAAATAAAACAACTAGTACTCCTCGAGCTTATCTGCGCTCAGCAAATGCAAAGTCGCAAACAAAGACGTCCAAAACTGAGGTAATATCGAATAAAGTGGTCATTGATAATGTGGACGAGCTCGAGGAGCTGGTCGATGATCCAGATGTCAATGACAGCAAAGATGGAAATGAAACCATGgattcaattacaattgatGAGCCCGCCTCCGTAACGGCGGCTGCAGTAAGCGATGATGAAATCTTCGAATTTGATGATAATCCCGCCAACATGTCAGCCAAGGCAGACGTGGACTTTGTCGTCTCTGGCAAACAGTACAAATTAAAGGCAGTGGCGGCTCCATCGGCGGCTGGCGCGCAGAAATTTGCCTGCTCCCACTGCAGCTACACGAGCAACAAGAAGTTCCTCATCTCACGACATGTGCGTTCCCACGACACTGAGTTCTCGTTCAAGTGTTCGATCTGTGAGCGTGGTTTCAAAACGAACGTAGGCCTAGTAAACCATCTGAACACGCACATGGGCAACAAGCCGCACAAATGCAAGCAATGCGACAGCGCCTTTACAACAAGTGGCGAATTGATTCGCCACACACGCTACAAGCACACCAAGGAGAAACCACACAAGTGCACTGAATGTAGCTATGCTAGCGTCGAGTTGACCAAACTGCGCCGGCACATGACTTGTCATACTGGCGAGCGACCATATCAGTGTCCACACTGCACCTACGCCTCCCAAGACATGTTCAAGCTGAAACGCCATTTGGTCATTCACACCGGCGAAAAGAAATACCAATGTGACATCTGCAAATCGCGCTTCACTCAATCTAATTCACTGAAAGCACATAAGCTCATCCACAGCGTTGTGGACAAGCCCATCTTCCAATGTACGCTCTGCCCCACAACATGCGGACGCAAGGCGGATCTGCGCACTCACGTGGCCAATATGCACACATCGGACACCCCGTTTATTTGCAAACGTTGTGGTCAGGAGCTGCCCGATCGTTATCTGTACAAACTGCACTTAAAGACACACGATGGCGAAAAATGCTATCGTTGCACCTTGTGCAGTTATGCGTCTGTTTCGCAACGCCATCTCGACTCgcatatgcacatacacaccGACTCGAAGCCCTTCCAATGTGATCTGTGTCCACAAGCATTTCGGCAGCGTCAATTGCTGCGTCGCCATCGTAATCTATTGCATGATGAGGACTACAAGCAGCCAGAGCCGCGTGAAAAAGTTCATTCCTGTCCCAACTGTTCGCGTGTCTTTTACCGGAAGGGCAATCTGATGAGGCACATGGAGCGACATGACGCTAGCCTAAATTCTCGCGAGAAGCAGCTGAAGTTGAAAATGGGTCGCAATGTTCGTCTGCAACCGGATGGCAGTATTACGACGCTTGTAAATGGCGTTGATATGGATGCACTGCGAGAGACAAGCGAAGATATGTCCATTGACTTAGAAGATCAATACGAGATCAGCGACTTCGTGGACTTGGACGAAGATGCGGACGAAAAAGTGTCCGATGAAAACCAAGTCAAGTCCTCTGCCATCTCTACTTCGCGAACGAAAAAAACGCCCAATaacgagagagacagagagcgggAGAAAAAGAAGAATCAGCGGAAGCTTGTCATTATAAATCGCCAGTTAAAAGCGCCACGAGGCCAGACCGAAGTCGTATCGCAAGGCGGCACATTCCGAATTAAAGAAGAACCGGATGCCGGCGATTTTACAGTGGAGCTACAAGATGAAGATGAGCAATTCATCGTCGAGCTGGTCAACGATGATAATGAAGTGGTGGTCAAGCGTGAGCCCAACAACCAAAAGATCAATGCAAACAACTGTTTTGGCTTCGAGgatgatgctgatgccgaATACGACGACTATGTTGAACATGCGACCGAGGTGGATGCTACCTCACAGGAGTTTATGCAGCTGATGGATATGATTGAGCAGGATACGTAG
Protein Sequence: MPNRSRDSDSEDLQSFLMNFHKEIEDNAAKENGSVVASNANGGGDDEEEEDADKYFIDDEGNCYIKTKPKKQLKSKTKQKAPVTSTPAAITVRASGSSTSKAINLRPANSKVDSTPQRTPKVVNTRPGPQKKTPNKTTSTPRAYLRSANAKSQTKTSKTEVISNKVVIDNVDELEELVDDPDVNDSKDGNETMDSITIDEPASVTAAAVSDDEIFEFDDNPANMSAKADVDFVVSGKQYKLKAVAAPSAAGAQKFACSHCSYTSNKKFLISRHVRSHDTEFSFKCSICERGFKTNVGLVNHLNTHMGNKPHKCKQCDSAFTTSGELIRHTRYKHTKEKPHKCTECSYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHLVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPIFQCTLCPTTCGRKADLRTHVANMHTSDTPFICKRCGQELPDRYLYKLHLKTHDGEKCYRCTLCSYASVSQRHLDSHMHIHTDSKPFQCDLCPQAFRQRQLLRRHRNLLHDEDYKQPEPREKVHSCPNCSRVFYRKGNLMRHMERHDASLNSREKQLKLKMGRNVRLQPDGSITTLVNGVDMDALRETSEDMSIDLEDQYEISDFVDLDEDADEKVSDENQVKSSAISTSRTKKTPNNERDREREKKKNQRKLVIINRQLKAPRGQTEVVSQGGTFRIKEEPDAGDFTVELQDEDEQFIVELVNDDNEVVVKREPNNQKINANNCFGFEDDADAEYDDYVEHATEVDATSQEFMQLMDMIEQDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00520804;
90% Identity: iTF_00562630; iTF_00553867; iTF_00556670;
80% Identity: iTF_00553867; iTF_00556670;