Basic Information

Gene Symbol
Trerf1
Assembly
GCA_035046005.1
Location
JAWNOK010000031.1:1626042-1641843[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.3e-09 1.9e-06 28.1 0.1 2 45 1740 1783 1739 1784 0.93

Sequence Information

Coding Sequence
ATGGCTGCCATAAATACGGTACCCAAAAGCATCCATCTGCCACTGACAAGTCTCAGCACGCCGCGTGTGTTGATGTGCAGCGCCTCTGTTGCCACCGAGGGTTCCGTGACACTGCAGTTGAGAGATGCCAATTCCTTggagacagcaacagcagcagccacagcaataacaaagccaacagcagcagcaacagcaacagcagcatcgtCATCACCAGCAACAAGCAATCCAACAAATGGCGTCACCGTTCTTGagacatcaacaacaacaacagcatcggCGTCAGCAACGGCGTCAGCGTTAGAGAATGCATTGACCATTGGATATCCGGATCCGGACATGCTAGCAGATGTTCTGGGCACCATACAGACAGCCTCTCTTAAGaacaaacacagcaacaaacgcagcagcaacagcaatagcagtAGCAGAACaaacagcagtagcaacagtgCAACAACAGTTTTGAGTACAAGCTCTGGCATTCATTTGAATAATCCGAATAAGATTACCATAACGCGACGAAGTTCGAGCAACAAGATCAGTGTACAGACAGTGAGCACGTCGACAAATACAACCATTAGCAGTATTAGTGGCAGCAAGACCAACTACATTAAAAACTGTCTAatacgcagcagcagctgcagcaacactGCCACCAATGTCACTACTCTGGCACAGATtatgagcaacagcagcaccagcagcgcTGCCAGTTTACTCAGTcagcataataataatagcaattgcagcaacagcagcaactttaGTAACGCCTCATCTGTTGGTAGCAGCATTAGCAttggcagcagcaccaactgcagcaacagtagcagcagcaccaacagcaacagcaacagtaacagtaacgacagcagcaacagcagcagcggtcaCAGTCTTAGTTTCAAGAGCAACGGTCGAAATGTTCCTGGCGTAgtcacaacagcagcatccaCAAACACCACAGCAACTGGCATTGGTATTGTCACCGTCGACACCGCACCCCGCAAGAGTCGACCAAAGCTATCGTCACCCACACGCCACGGACCACAGCAGTGTCAGatttgtaGCAAGATCTTTGGAAATGCCTCGGCGCTGGCCAAGCACAAACTGACACACAGCGACGAACGGAAATATATTTGTGCGCTCTGCTCGAAGGCATTCAAGCGGCAAGATCACTTAAACGGACACATGATGACTCATCGCAACAAGAAGCCTTACGAGTGTAAGGCGGATGGCTGCGGCAAATCGTATTGTGATGCACGCTCTCTGCGCCGCCACTCGGAAAATCACcatggaggcgtggcaacgcCCACCAACAACTCACTGTCGCCCACGGCCAGCTGCAGTAGCGgtagcagcaacggcagcaacaacaacaacataggTGTCGCCACCAACTCGTTGAGTCTGTCGCCGGCAACGGCCAGCGGTGATGCCAGTTCTCCAGATGGCGCCACCTGCATACGCACTTACATCTCCACGGGGAGCAGTGTAGTGGATGCAGCCACAGGAATTGCACTTTCCGAGGAGCAAATCAAGGCCATGAATCTACCCATTAAGACAGGAGTCACTTTACTCTCTCCCACGACGTCGACATCCTCGAATGCCTCGTCCACAGCATCCTCCACATCGTGCTCCTCCTCGTCGACTGTGGGCTGCAATAATGGCAATTTTGGCAACGCAGTTATGGCCAGTTCACCGACCATAACGCTCAGTGATGGCGCCATGCTGGAGGGCGATGGTCTGACACGGGAGCAGCTCGATCTTATAAGCAAGATCATGCAGCAGACGAAACAGACAAGCGCCCAGGTCACTGTCTCCTCACCCACGAGTGTTAGCTCCTACAAAATAAACACGGAGACTGCTCCGGTCCAGAGTCGACCACGCACCTGGAATATGCAATTGCTCAATAATGCCCAGAACGTGACGGTAACAGTTGAGGATGGCAGCGAACTGGTTGCCAACTCCAACAGTTCTACGGAGGACGTCAAGGAAGAGGAGCTAAACCAACAGATTGTCGCTGCCATCAATCCCCACCTGCTCAACATTGTGAAGATCGACAAGCCAGTCGAGTGTAATCTTTGCCACCGCAAGTTCAAAAATATACCCGCCCTCAACGGACACATGCGTCTCCATGGCGGCTACTTCAAGAAGGATCCGGAAACGAAGCGCAGCGAAAAGAAGGATGCCAGTGGACCGCCTCTACAGACGGCCAGCATCGGAGTGCGGGCTCTGATCGAGGAGAAGATCATAAGCAAACGCAAGGACATCAACAAGGGTGCTTTTGTAGTGCCTGCCCCACCTGGTAGCTCAGTGAACAACGGTGGTATTGGCGGTGGTGCTGGGATTGCTGGCGTTAACAACAGCGGTGGTAATCTACGGCATTCTATCAGCGACTTGGAGAGTTTCCTCAACCCGAAGAGCAGCCTCAGTCAGGCACtggccaccaccaccaactgTAGCAGCTCGAGCACCACCACTGCGGTACTGCCAGCAGCCACCACCATCAAGAGCAGCAATGGCTTAAGCATTCAGCAAATCGGATTGCCACAGAGCATTGAAATCTTCAGTGGTGGTCAGAGGCAGCCAAAGACACTGAGTCTGGGCAGTGGTGCGAATACGATAACTATAACCACCAACAATGTGCCTACGACAACCACGATGAGTGCTCTGACGGCACTCAAGGGAAGCAGCGTTGGAGGCGTCACCAACCATGCGGATCCCAAGGACTCCACGCTGATTGAGCTCCTGAAACGTGGCACACGCATCGCGGTCACCTCGAAGAAGACACAGCTGCAGGCACAGACAAGTACAAACCTGTTGCTTGGCAGTATGACAGGCACGGAGCTCGGTAGTGTCCAGGCGGGACGACAGATTATCACCAATAACAATCGTACTGTTATCATACCCTCAGATGTGCATGTGGTGTCCACCAAGAGCAAATTGATCTCCACCAACAACGTCAAtagcaacagtagcaacatgaacagcagcaacaacaccaccaGCAGCATCTCCCTGCCCGATGGCACGCCCCTTTCCCTGACCATAGCGCCAAATCAAGAGCGCATTGGCGTCATCGGAGATTCTGGTGGCTTAACAGGAGCAGGGGGCGGTGTCTATACGGTGACCTATACTAGCGATGCGGACGCAGCTGATCTCTTCGATGATGCCGAGGTCTACAACGTCTCTGATACGGAAATGCTGCTGCAAACGGTGGACACAATGGAGCTGCTCAACGAGGAAGAGGACGAGGCACACAAAAGCGAACATTCCGAAGACTTTGCCCTGCTCAGTGGCGAGCAGACTCAGCTGATAAAACTGGAGCCAGATGCAGGGcttagtaacaacaacagtaacagcaataacaataacaacaataatactAACCAGACAACACCGCTGCCCACCTTCCAGCAATTCCATTCCAAGGAGCTCATCATGCAGAATAGCTCACAGATCCAGGCGATAGCCAATATGCGAGGAGTGAGCACATTGGGTGTATTATCCTCACCGCTGCACTCGCCCCTCGCCTATCCGACGCCACCGTCCAGCCACGAGAACGTGGCCCAATCCTCACCCTTCATCGAGGATGCGGCTGCTCAATTTGTGGATGCGAATCACACGTTCTTCAGCGACAAGACGGACTTCTCTCATGTCTACTTCAAGACGGATGACGGCAATGCACTGCAGCAGCTGAGCGACAATGACAACGAGAAGATTCTCAAACTGAAGTCCGTGCTGGAGGAGAGCAGCTTTGATCCGTCGATCAAGGTCGAGGATCTGCTCAACACCAACGAGGATGATGCAGAGTGTGATTTGCGTGAGTTTGCCGAAACAAATCTTTCGTTTCTTGACGAGGATCAGGAGTTTCTGAATGATTCACGCAATGACACCTCACCGCTGTCGGAGTCCTTCTTCACCAGCGGCATTGGATCCGCTGAGGATGTCAAACAGGTGCTACGTGAAGTGCTGCCCGATGAGCAcatgcagctgcagctgacCAGTGAGCAGCAGGGCGAGAATATCATAGATCTCTACTATCTGCCGGGCCTGGGACTGCAGTCACAAATGATGCCCAACTCCGATGATCCGTTGTTGTCCTCCTCACCACGGGAGTTTGGACAGCGGCAGGGGCTGCATGCCACAGCCACAGCGACGACAACAGTGCAATCCATGGAGCAGACAGTGCTCTACGAGCAACAACCatcgcagcagcaaccacaacagcagcagcaacagttgctgccgCAGGCACAGACTCCACTGCAGCCagatcaacaacagcaacagcagcagcaaccacaaccacaacaacagcagcagcaacaacactcTGAGTTCATGTTGCCCAGCTTCACTCCAGTCTCGTGTCAGACTCAGTATTTGGACACCAGTCAGCAATCGATGACATTGCAGCCACTGAACAGTCTGTTGCAGCCACTGCTTTATACCACAAACGGTGGCAACAACGTCGCCAGTGACAAACAAGAGTTTACTACACTGCTCAGCAGCAATGCCAGTGGACAGACAACAGTGCTTGATGCCAGTCTGCTCTTTGCTTGCGGAGACAGTGCCAGCAAACCAGTACTTGCAACAGCGATGCCTGTGGCATTGCCCCCGCCTGTAGCAACTGTCTCGAATCTGCAGCCGTTGTCAAATCAAACCAATTCCATACTCAAACGCCGTCTGCGCTCCAATGGCACTCAGGATGTGCACAAGTTCTCTAAATTCCATACGCTCTCCCCACATCGCTCCAAGCTGCGTAAACCCTCCCGCACGCACTACACGCCAGCTCCCATACTGAACCCGGATCGCAAGGGAACCGGTCTGTACTGCAATGTACGCAAGCAACTCGGTCAGGGTATTTTCGATGTCTTCGACGACGACTTTGGTGATCCTGTGGGTCTTGTAGACTTCTCCGACGAATCAAAAGTGAACCTCGGCTCGACCTATCAGGCTCAGATACCAGCCTGCAAACCCCTGAACGAGTACAGCAAGGACACACCCATGGCTGCCGATCTGATGTGGGATCCCAGCGTTCAGCTGGACGAGAAAATACTCATGCGATACATTGATCTCAGCAAATCATCTGCCGTACCCATGGGCAGCCATTCGGAGGAGGTGGCTCTGCAAACCCTACTCGAGGCCAAGGGCAACTCGGCAGCTGCTGTACTCACCCTGCTGCAGACACAGTCCAGCGCATTCCAGATGAAGTGGACTGCCTACGAGTTGGAGCAATTCCTGCGAGGTCTCGAGAAGCATGGCAAAAACTTTGGAAAAATCGCAAGCGAGTTGCTTACAAAGACATCGGGCGAGTGCGTACAAATGTATTATTTCTGGAAGAAGCTCTGTGTTGACTATAAGGTGTCACATCTGAAAATGGAGCCGGTTACGCCCAGCACTCCGACGGTGGAGCAGAAGCCCTACGTGTGCGAGATTGCCGACTGTTCGGCGAGCTTCAGTTCAAAAGCGGCATTGCATGGTCATGTTCGCATACACGCTTATGGTAGAAATgccagtaacaacaacagcaacaacaacaacaacaacagcaacagcaacaatcagCATGCAACGGCATCtagtgccaacaacaatagcaacaacaacaaccaccaccaTAGTACCagcaatcacagcaacaacgcaTGCGCGACTCCCACTAGCAGCATTAATgcaataacaactacaacaaccatAACGCACACCAATGGCAATAACACCACCGTGAACAACATtagtaacaacaaccacaccaacaacaacaacaataattccATGCTAGTTGCCTGTTCAACTCTAAATTCAACACTGTTGTTGACAccagtagcaacaacagcatcagcagcaaccacaTCGATAGCAATCaaagacaacagcagcaacactggcaacaacaacagcagcaacaacaccagcaccaCTGCGAATGCTGCCAAGGATAGCGAATTCCCCTGCAAGGTGTGCGGCAAAGTCTTCAATAAGGTCAAGAGCCGCAGTGCCCATATGAAAACTCACCGAGTGCTGGAAACGGAACAATCAACGAATTCCAAACAGCAATcgtcctcctcttcctcctcaaATGGAAATCAGTCTGTAACTGTAGCTGCAGTATCGGTCATGGCCTCTACATCCTCATAG
Protein Sequence
MAAINTVPKSIHLPLTSLSTPRVLMCSASVATEGSVTLQLRDANSLETATAAATAITKPTAAATATAASSSPATSNPTNGVTVLETSTTTTASASATASALENALTIGYPDPDMLADVLGTIQTASLKNKHSNKRSSNSNSSSRTNSSSNSATTVLSTSSGIHLNNPNKITITRRSSSNKISVQTVSTSTNTTISSISGSKTNYIKNCLIRSSSCSNTATNVTTLAQIMSNSSTSSAASLLSQHNNNSNCSNSSNFSNASSVGSSISIGSSTNCSNSSSSTNSNSNSNSNDSSNSSSGHSLSFKSNGRNVPGVVTTAASTNTTATGIGIVTVDTAPRKSRPKLSSPTRHGPQQCQICSKIFGNASALAKHKLTHSDERKYICALCSKAFKRQDHLNGHMMTHRNKKPYECKADGCGKSYCDARSLRRHSENHHGGVATPTNNSLSPTASCSSGSSNGSNNNNIGVATNSLSLSPATASGDASSPDGATCIRTYISTGSSVVDAATGIALSEEQIKAMNLPIKTGVTLLSPTTSTSSNASSTASSTSCSSSSTVGCNNGNFGNAVMASSPTITLSDGAMLEGDGLTREQLDLISKIMQQTKQTSAQVTVSSPTSVSSYKINTETAPVQSRPRTWNMQLLNNAQNVTVTVEDGSELVANSNSSTEDVKEEELNQQIVAAINPHLLNIVKIDKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDPETKRSEKKDASGPPLQTASIGVRALIEEKIISKRKDINKGAFVVPAPPGSSVNNGGIGGGAGIAGVNNSGGNLRHSISDLESFLNPKSSLSQALATTTNCSSSSTTTAVLPAATTIKSSNGLSIQQIGLPQSIEIFSGGQRQPKTLSLGSGANTITITTNNVPTTTTMSALTALKGSSVGGVTNHADPKDSTLIELLKRGTRIAVTSKKTQLQAQTSTNLLLGSMTGTELGSVQAGRQIITNNNRTVIIPSDVHVVSTKSKLISTNNVNSNSSNMNSSNNTTSSISLPDGTPLSLTIAPNQERIGVIGDSGGLTGAGGGVYTVTYTSDADAADLFDDAEVYNVSDTEMLLQTVDTMELLNEEEDEAHKSEHSEDFALLSGEQTQLIKLEPDAGLSNNNSNSNNNNNNNTNQTTPLPTFQQFHSKELIMQNSSQIQAIANMRGVSTLGVLSSPLHSPLAYPTPPSSHENVAQSSPFIEDAAAQFVDANHTFFSDKTDFSHVYFKTDDGNALQQLSDNDNEKILKLKSVLEESSFDPSIKVEDLLNTNEDDAECDLREFAETNLSFLDEDQEFLNDSRNDTSPLSESFFTSGIGSAEDVKQVLREVLPDEHMQLQLTSEQQGENIIDLYYLPGLGLQSQMMPNSDDPLLSSSPREFGQRQGLHATATATTTVQSMEQTVLYEQQPSQQQPQQQQQQLLPQAQTPLQPDQQQQQQQQPQPQQQQQQQHSEFMLPSFTPVSCQTQYLDTSQQSMTLQPLNSLLQPLLYTTNGGNNVASDKQEFTTLLSSNASGQTTVLDASLLFACGDSASKPVLATAMPVALPPPVATVSNLQPLSNQTNSILKRRLRSNGTQDVHKFSKFHTLSPHRSKLRKPSRTHYTPAPILNPDRKGTGLYCNVRKQLGQGIFDVFDDDFGDPVGLVDFSDESKVNLGSTYQAQIPACKPLNEYSKDTPMAADLMWDPSVQLDEKILMRYIDLSKSSAVPMGSHSEEVALQTLLEAKGNSAAAVLTLLQTQSSAFQMKWTAYELEQFLRGLEKHGKNFGKIASELLTKTSGECVQMYYFWKKLCVDYKVSHLKMEPVTPSTPTVEQKPYVCEIADCSASFSSKAALHGHVRIHAYGRNASNNNSNNNNNNSNSNNQHATASSANNNSNNNNHHHSTSNHSNNACATPTSSINAITTTTTITHTNGNNTTVNNISNNNHTNNNNNNSMLVACSTLNSTLLLTPVATTASAATTSIAIKDNSSNTGNNNSSNNTSTTANAAKDSEFPCKVCGKVFNKVKSRSAHMKTHRVLETEQSTNSKQQSSSSSSSNGNQSVTVAAVSVMASTSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00533739;
90% Identity
iTF_00471114;
80% Identity
iTF_00471114;