Basic Information

Insect: Dromius quadrimaculatus
Gene Symbol: salm
Assembly: GCA_963989225.1
Location: OZ022336.1:28025537-28027489[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.001 0.19 14.1 3.0 3 20 48 65 47 67 0.93

2 13 0.00064 0.12 14.8 2.0 1 23 92 114 92 114 0.97

3 13 0.76 1.4e+02 5.1 0.1 2 20 133 151 132 153 0.83

4 13 0.00065 0.12 14.8 1.0 1 23 210 232 210 232 0.99

5 13 5.9 1.1e+03 2.3 1.6 1 21 238 258 238 259 0.89

6 13 0.83 1.5e+02 5.0 7.4 3 22 276 295 274 298 0.88

7 13 0.94 1.7e+02 4.8 0.1 1 23 395 418 395 418 0.91

8 13 1.1 1.9e+02 4.7 1.8 1 23 422 444 422 444 0.93

9 13 8.5e-09 1.6e-06 30.1 1.1 1 23 450 472 450 472 0.98

10 13 0.008 1.5 11.3 0.6 1 23 478 503 478 503 0.96

11 13 0.0066 1.2 11.6 5.7 1 23 509 531 509 531 0.98

12 13 4.3e-05 0.0079 18.5 1.1 1 23 537 559 537 559 0.98

13 13 2.5e-05 0.0045 19.2 1.4 1 23 565 588 565 588 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.001	0.19	14.1	3.0	3	20	48	65	47	67	0.93
2	13	0.00064	0.12	14.8	2.0	1	23	92	114	92	114	0.97
3	13	0.76	1.4e+02	5.1	0.1	2	20	133	151	132	153	0.83
4	13	0.00065	0.12	14.8	1.0	1	23	210	232	210	232	0.99
5	13	5.9	1.1e+03	2.3	1.6	1	21	238	258	238	259	0.89
6	13	0.83	1.5e+02	5.0	7.4	3	22	276	295	274	298	0.88
7	13	0.94	1.7e+02	4.8	0.1	1	23	395	418	395	418	0.91
8	13	1.1	1.9e+02	4.7	1.8	1	23	422	444	422	444	0.93
9	13	8.5e-09	1.6e-06	30.1	1.1	1	23	450	472	450	472	0.98
10	13	0.008	1.5	11.3	0.6	1	23	478	503	478	503	0.96
11	13	0.0066	1.2	11.6	5.7	1	23	509	531	509	531	0.98
12	13	4.3e-05	0.0079	18.5	1.1	1	23	537	559	537	559	0.98
13	13	2.5e-05	0.0045	19.2	1.4	1	23	565	588	565	588	0.96

Sequence Information

Coding Sequence: ATGGATGAGTCAAACTCAATGGATCCTATCGCAAGAGTAAATACTTCCACAAATGGCGAGCCTATTAACGAGAATGTCTTCTCTGAGATAAAAGAGCAGCAAGAAAATCGTATAAACCTATccattacaaataaaattttgtgctcAAATTGTGATACTTCATTCTCAACCAAATATCAATATCAACGTCATGAGTGTAAACTTGATACTGAAAAAATTGTTCTTCAATCAGAAATCCCTGATAAAGATTTGAATAAACCCActagattgaaatttgtatgcgGTGTTTGCAAAACGTCATTTGTTAGCCAAAATcgtttgaaaaatcacaaaaaatatcacTGCAAGAAAGCAGAagacacaacaaaatattataggAATGATGTAGCAGTTTGGCGCTGTGAACAATGCAAACAAATATTTGCAACCAATGAAGGCGGAAAAGAACATATTAAACAATGCCCAACAGTAAGAATATCCACACCAActgttgaaaatgaaaataataaaatgaatatatccGAGCACAACAATTTTGAGTCTAATTTTGAAAATGCCATTTTGAATCAATCTGGTTCCTGCAAAGAAATCTCTGATACTTTGGGAAGAATCATAACGAGGATTTTGTATCAGTGCGAATTTTGTAATCGTACTTACGCTGAAAGAACAGCAGTACTTAACCATCAAAAAACTCACacaactgaaaaaaattatgaatgcaTTTACTGTAACCAACATTTCATTAGTTATTGTCAAGCCACTGTACATTGGCAAAGTAAATGTAACAGTGAATCAAATTCATTCTATCTCCCCAAAATAATATGTTGCGAACATTGCAACAAAGATTTCAAATCTCACGAAGTATTATACACTCATAAAAACAAGAAGAAGCATTTCACTCCAAGAATTCAAAGTAGAATTGACAAGAAACCTGATGTAGAAATAAAATCAGTAACCGAACAAACAATAGCCAAGATGATTGTAAGCATGATTGCTAAATTAAATCAAACAGCTGATACAATAAACAATGAAAATGATCAGAACGAAAATAATTTGTTGGGGCGAATTAGGGGAGAAACtgatgaatttaattcaaaatatgagAAGAAAAAACGAGGACGAGAGAGGGAGTGGCAAAATACTGAGGTGAATAATGAATTTGAAGCTAGCGAAGGTTGTCAGTATCAATGCGAGAAATGTGCAGCTGCTTTTGAATCAACTATCGCAATGGATATACACAAGGAGACTACCCATGCAAGCACTTACAGATGCGAACAATGTGAAcaaatTGTACATAGTGAAAAAGCTCTTACAGTCCATTGTCGAGCCCACCAAAGCATCAAGCCTTATGTATGCGATCAATGTGGCCGTAGTTTCTCTCGAAATTCTAATCTTTGGCAGCATATGAGGTTCCATCTAGGTATAAAGCCCTTTGCCTGTCCTCATGAAGGTTGCGAAGCGAGGTACACCATCCACTCTGATCTGAAAGACCATATTCGTAGTGTACATACTCGGGAACGACCTTTTAAATGCTCTGTTTGCAATAAATGCTTTTTGACTAAATCAACTTATTACCAACATCGCTTGATTCACACTAACGATCGTAGATATGAATGTGAAATCTGCAACAAACGTTTTCTTCGATCGAGTACcttgaatattcacaaaaaaattcacaCGGGTGAGCGTCCGTATCCATGTCCGGTTTGTGGAAGACAATTCACACAAAAGGCGAATAGAAATAAACATGTTCATAGTCAACActcattataa
Protein Sequence: MDESNSMDPIARVNTSTNGEPINENVFSEIKEQQENRINLSITNKILCSNCDTSFSTKYQYQRHECKLDTEKIVLQSEIPDKDLNKPTRLKFVCGVCKTSFVSQNRLKNHKKYHCKKAEDTTKYYRNDVAVWRCEQCKQIFATNEGGKEHIKQCPTVRISTPTVENENNKMNISEHNNFESNFENAILNQSGSCKEISDTLGRIITRILYQCEFCNRTYAERTAVLNHQKTHTTEKNYECIYCNQHFISYCQATVHWQSKCNSESNSFYLPKIICCEHCNKDFKSHEVLYTHKNKKKHFTPRIQSRIDKKPDVEIKSVTEQTIAKMIVSMIAKLNQTADTINNENDQNENNLLGRIRGETDEFNSKYEKKKRGREREWQNTEVNNEFEASEGCQYQCEKCAAAFESTIAMDIHKETTHASTYRCEQCEQIVHSEKALTVHCRAHQSIKPYVCDQCGRSFSRNSNLWQHMRFHLGIKPFACPHEGCEARYTIHSDLKDHIRSVHTRERPFKCSVCNKCFLTKSTYYQHRLIHTNDRRYECEICNKRFLRSSTLNIHKKIHTGERPYPCPVCGRQFTQKANRNKHVHSQHSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00470314;
90% Identity: iTF_00470314;
80% Identity: -