Dqua043641.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022331.1:25259232-25265670[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0063 1.1 11.7 0.2 2 20 234 252 233 254 0.92 2 14 0.0013 0.23 13.8 1.8 1 23 288 310 288 310 0.96 3 14 0.00073 0.13 14.6 1.7 1 23 323 345 323 345 0.96 4 14 6e-05 0.011 18.0 1.6 2 23 367 388 366 388 0.97 5 14 0.035 6.4 9.3 1.2 2 21 395 414 394 416 0.94 6 14 0.00076 0.14 14.6 2.0 3 23 423 443 421 443 0.98 7 14 0.009 1.6 11.2 0.4 1 23 452 474 452 474 0.91 8 14 0.00059 0.11 14.9 3.2 1 23 479 501 479 501 0.97 9 14 0.078 14 8.2 1.3 1 23 506 528 506 528 0.94 10 14 4.9e-05 0.009 18.3 1.9 1 23 534 556 534 556 0.98 11 14 2.3e-06 0.00043 22.5 0.8 1 23 562 584 562 584 0.99 12 14 0.00022 0.04 16.3 3.9 1 23 590 614 590 614 0.98 13 14 0.00069 0.13 14.7 1.1 1 23 620 642 620 642 0.98 14 14 2e-05 0.0037 19.5 7.1 1 23 648 670 648 670 0.97
Sequence Information
- Coding Sequence
- atggaTGAACAGATTATTCTTCAGTTACCAGATGATGTGCATAAATTATGCCGCACATGTATGTCAGTTACAGAAAATTTATTGTGTCATGACATTGTTCTTGTGGATTATAATGACCTAACTTTAGCAGGAgaaatgttgcaattttgtataTCTGATTCGATTGGATATGAAGATGGACTACCTAAATCAATATGTGATGACTGTGCAAGTACTTTGGAaatcttttataattttaaaagtcAGTGTGAACAAACTGAAATCAacttaagaaaaatattaaatataccttcaaaaattaaaattaaaaagcaAAGTGACACAGAAGTTGCTAACATACCTGAGAAGTCCAGAGGTGTCGAAATTTATAGTAGTAATTCCGTCCAAAATTGGATTGATAACACAATCGAAATCGAAGAGGAATGCGAAATTACAGTTgagacaatatttcaaaaattgagagACTCAAGCAGTATTAACAATACAAATAGCAAAGCTAATATTTTAGATAtccaatcaaattttgataattcaagttcTCAGGATGACATCACCACTTTAATTGAGGAAAGAAAACAAGCAGAAAATGATATTACTAATGACGACTCAGATTCTcttattgaagaagaaaaattagcCAGTGCCCATTTTATAgtaaaagaagaaatatttagTGGAGAagaaacaaataatgaaataacatGTAAATTATGTGATATAACATTCGAGAATACTACAGAATTCAATAGACATTCgcaaatttgtaaaaataaggctgtattagaaaatattatcaaattggaAAGTAATAGCCTAGAAGAATTAGAACTATACCaagatgaaaataatgattttttcccACATAAGTGCACGATATGTGgaagtaaattcaaaacaaagcAGGGTAAGAATGCACATATGATTGCTCATGCAAAAGCAGTCGAAGGAACTACTCCAGAAAGAATATATTCTTGtgatttatgcaataaaatatttataacagaaTCTAAATTATCGTCACATTTTTATAAACACGCTATACAAATTAGAATAGAATTAGAACATAATAAAGCAATAACAAATGATGATGAAAACTTAAGATGTACATTTTGCAATGAAAGTTTTGAatcaaaagaatatttaaatgatCACTTAAAAAAGCACACGAAAACTGGAAAAGTTATGTGTgaaatttgtcattttgacTTCATTGGGGAAGTTAATTTAATCAAACATTTACGATGTCATGACGTCCACATTTTACTGTGTAAAGTATGCTTAAAAAGATTTGATCATCCAATAAAGTTAAAAGAACATATGAAATCTCATTTAATTGAGAATAttaaaagtaatttcaaatgcCCGATTTGTAAAATAGAATTTACCgagatagattttttgaaacaacattcAGTACAACACTTAGATGAAGTATTTGAgtgtaaaaaatgtaaaaagactTTTCGTAATAAAGTCGTTTACGAAAATCATGAAAAACAGCACAACGAACCAAGATTTTTGTGTTCATTATGCGGtaaacaatacttttcgagtgTTACGTTAGCTTGCCACATTCGAGCACACAACAATGAAAAACCATTTGTTTGTGTACATTGTAAAAAAGGTTTTTCATCAAGAGCAACTTTATCAGTTCATAAAAGAATTCATTCTGGTTTCAAACCGTACGTTTGCTCATATTGCGGTTACAGTTGTCGCCAAAGTGGCGATTTAGTTATGCATATTCGTATTCATACAGGAGATAAACCTTACAAATGCACTTTTCCGAATTGTGACCGCAAGTTTACTACATCAAGTCAACGAAAGGAACATTATAGAAGGCATACAAATGAGAGAAACCATAAGTGCACACTTTGCGGGAGAGCTTTTTTGGAATCAAAAACTTTAAAAGTGCATATGCTCGTTCATACTGGAGAGAAACCACATTCTTGTGAAATTTGTGGTAAAAGATTTAGAAGGACACATCATCTGTCTAATCATATGAAAGGACacaaagatcaaattattgGAACGTAA
- Protein Sequence
- MDEQIILQLPDDVHKLCRTCMSVTENLLCHDIVLVDYNDLTLAGEMLQFCISDSIGYEDGLPKSICDDCASTLEIFYNFKSQCEQTEINLRKILNIPSKIKIKKQSDTEVANIPEKSRGVEIYSSNSVQNWIDNTIEIEEECEITVETIFQKLRDSSSINNTNSKANILDIQSNFDNSSSQDDITTLIEERKQAENDITNDDSDSLIEEEKLASAHFIVKEEIFSGEETNNEITCKLCDITFENTTEFNRHSQICKNKAVLENIIKLESNSLEELELYQDENNDFFPHKCTICGSKFKTKQGKNAHMIAHAKAVEGTTPERIYSCDLCNKIFITESKLSSHFYKHAIQIRIELEHNKAITNDDENLRCTFCNESFESKEYLNDHLKKHTKTGKVMCEICHFDFIGEVNLIKHLRCHDVHILLCKVCLKRFDHPIKLKEHMKSHLIENIKSNFKCPICKIEFTEIDFLKQHSVQHLDEVFECKKCKKTFRNKVVYENHEKQHNEPRFLCSLCGKQYFSSVTLACHIRAHNNEKPFVCVHCKKGFSSRATLSVHKRIHSGFKPYVCSYCGYSCRQSGDLVMHIRIHTGDKPYKCTFPNCDRKFTTSSQRKEHYRRHTNERNHKCTLCGRAFLESKTLKVHMLVHTGEKPHSCEICGKRFRRTHHLSNHMKGHKDQIIGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -