Dqua023723.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022327.1:59962508-59964286[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.079 14 8.2 0.4 2 20 27 45 26 47 0.92 2 13 0.15 28 7.3 2.7 2 21 54 73 53 74 0.92 3 13 3.7e-05 0.0068 18.7 0.4 2 23 79 101 78 101 0.96 4 13 5.2e-05 0.0094 18.2 1.7 1 23 107 129 107 129 0.98 5 13 1.8e-05 0.0033 19.7 0.4 1 23 238 260 238 260 0.97 6 13 0.00055 0.1 15.0 3.0 1 20 318 337 318 340 0.94 7 13 0.061 11 8.6 0.1 1 23 345 368 345 368 0.93 8 13 6.3e-06 0.0011 21.1 0.1 1 23 374 396 374 396 0.97 9 13 7.6e-06 0.0014 20.9 1.0 2 23 405 426 404 426 0.97 10 13 0.0064 1.2 11.7 0.5 3 23 434 454 432 454 0.97 11 13 0.0018 0.34 13.4 0.3 1 23 460 483 460 483 0.97 12 13 0.00032 0.059 15.7 0.3 1 23 495 517 495 517 0.97 13 13 0.00079 0.14 14.5 0.2 2 23 570 591 569 591 0.95
Sequence Information
- Coding Sequence
- ATGGCAGTAGAAGCTTTGAGACAACTTGGTGGCATGTATGAGGATATAGTAACCGTTCCTCAAGATCTATCAGAATTGTCTTGCAATGCTTGCAGTATGAGGTTCGAATCTAGCTCTGGTTTGTGTTCTCATACAATAATATGTAGAGCCCAAAGTTGGAAATGCACCGTTTGTGATTTATCATTCTTCAATGAACAATCCTACCATAATCACAAATGTATATTGGCTCAACTACCTTGCAAGTATTGTTACATCAATTTTTCAACAAGCAATGATTTAGAAAAACATATCGAAACAAACCACGCCACAGAACGTCCATATAATTGCAGTTTTTGTAAGATGACTTTTATCAAATCTTCTAGTTTGGCTaatcatcaaaaaattcataattatttgcCTGGAAGACAATTAATTGATAATACTGATAATATGGTCGCTACAAATTCAATGACCACTTTCTTAGAGAACGTGTATCCTGAAAATTGTATCAATTATAATTGGAATAATTCTCTTTTACAAAAAACcattgaattaaatttaaataaatctgAGGATGTCGAAATTACTTCAGACAGAGTTAATTTCGAGACACCAGTTAAAATAGAGGTAATACCATTTATGGCAGATATTGGGAACTGTTTAGACGAAACATTTCCTATAAATAATGTGCCCCAAATGGAAATCACAATTAGTACTGATCCTAAGAAACCATACATTTGTAACGAATGCAGTATGACTTTTAGCCGAGAAAAGGCACTAATCAATCACCAAAATCTCCATTCAGTAGGCTGGTCCTTTAAGCACGAATGTGAAAATTGTTGTCAAATATTCCCAGATCAAAATTCCATCCAAGAGCATAATAAATCTTGCGGTGTAATAAATCCGATAGATCAAGATATAcccaaaaaacaaaagaatgaaaatGTTAAATCACAAGTCAAAGTCGGAAAACACCGTTGCTCGGAGTGTGAAAAATCATTCACGactaaacaaaaaatgtttagaCATTTGTGGATCCACCGAAAGAAATCTTTCAGTTGTGAATTGTGTGCGATGAATTTTGCTGTCCAAACAGAGTTAGACAGACACAGAATAGCTGAACATCCAACGGATAGTCCCTATGTTTGCAATGAATGCGGAAAAAGTTTTGCAAGTCGACAAGGATTGTGGGAGCACGGTAGGGCTCATGGAGGAGGGCCAGCAGGATTACTTTCGTGTAATGATTGCAATAAAACATTTGCTAGTCGTCAGGGGTTTTTAATTCATCAGAGAACGCATACTGATGAACGACCATACGGTTGCAGATTTTGTTTAAAGGCGTTTCGGGACGGTGGCACTTTAAGAAAACACGAAAGAATTCATACCGGGTACAGGCCGTACGTCTGCCCCCTTTGCTCCcatgatttcaatcaaaaagtcGTACTTAGAGAGCATGTAAGATGGGTGCACACAGCAAGTAAAGTCGAAAATGTTGAAGGATTGTTtgaatgtcaaatttgtaatgttAGTTTGAGTGATAGAGAAGAACTCTGTGCTCATATTGTGAAGCATAGTGATCTTCTAGCTTCACAATCTAAAAATAATGATGTCGAAAGAGTTGGAACCCATAAAAAATCTGATAGAGTTAAACGTACAACACCCAGAAAaaataaacttgaatatgaacctGTAAATGTTGAAGATACAGAACaagatcaatataatattgaatgtGATATGTGTggagataaatttaaaactcaaaatgatttaaaaacaCATGCTGAAatacataaatga
- Protein Sequence
- MAVEALRQLGGMYEDIVTVPQDLSELSCNACSMRFESSSGLCSHTIICRAQSWKCTVCDLSFFNEQSYHNHKCILAQLPCKYCYINFSTSNDLEKHIETNHATERPYNCSFCKMTFIKSSSLANHQKIHNYLPGRQLIDNTDNMVATNSMTTFLENVYPENCINYNWNNSLLQKTIELNLNKSEDVEITSDRVNFETPVKIEVIPFMADIGNCLDETFPINNVPQMEITISTDPKKPYICNECSMTFSREKALINHQNLHSVGWSFKHECENCCQIFPDQNSIQEHNKSCGVINPIDQDIPKKQKNENVKSQVKVGKHRCSECEKSFTTKQKMFRHLWIHRKKSFSCELCAMNFAVQTELDRHRIAEHPTDSPYVCNECGKSFASRQGLWEHGRAHGGGPAGLLSCNDCNKTFASRQGFLIHQRTHTDERPYGCRFCLKAFRDGGTLRKHERIHTGYRPYVCPLCSHDFNQKVVLREHVRWVHTASKVENVEGLFECQICNVSLSDREELCAHIVKHSDLLASQSKNNDVERVGTHKKSDRVKRTTPRKNKLEYEPVNVEDTEQDQYNIECDMCGDKFKTQNDLKTHAEIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -