Dqua046002.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022332.1:6408574-6410838[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0034 0.62 12.5 0.4 2 23 72 93 71 93 0.97 2 14 0.044 7.9 9.0 4.2 1 23 132 154 132 154 0.95 3 14 0.0031 0.56 12.7 2.0 3 23 159 180 158 180 0.96 4 14 1.1e-05 0.002 20.4 5.7 1 23 190 212 190 212 0.98 5 14 1.5 2.7e+02 4.2 0.0 2 23 218 239 217 239 0.95 6 14 0.0021 0.39 13.2 3.5 2 23 246 267 245 267 0.97 7 14 0.0039 0.72 12.3 1.6 1 23 270 293 270 293 0.97 8 14 3.6e-06 0.00066 21.9 3.4 2 23 303 324 302 324 0.98 9 14 0.00042 0.077 15.4 3.9 3 22 332 351 330 354 0.89 10 14 3.8e-05 0.0069 18.7 2.4 2 23 365 387 364 387 0.95 11 14 0.003 0.55 12.7 1.7 1 23 394 416 394 416 0.97 12 14 0.00017 0.032 16.6 0.1 3 23 425 446 423 446 0.94 13 14 7.2e-08 1.3e-05 27.2 0.8 2 23 453 474 452 474 0.97 14 14 6.5e-05 0.012 17.9 3.3 1 23 480 503 480 503 0.95
Sequence Information
- Coding Sequence
- ATGATTCACAATTTCAAGTCACCTGAAAAAGATGAGGCAATTGGTTATTTGAGAAAGTGTATCAATAACGAGAAGAAATGCTTGAAGAAATCGTATCCGGAAGCTATGAGCTCGACTTCTGATGATAAAACTGAAGGACAACCGAAAAGAAAAGCTCGTAGAagaatcaaatataaatacaatACTTTCAgctcaataaaacaaaaaatattgagatgCCGCATTTGTGGCATAATAAACAGAACAAAAGCCTCTCTATTAAAACATATGAGCACCCATATAGGTACTCCAATTTCATGTAGGACCTGCAGAAGCGATTTCAATAATAGAGCATCGTATTTATGTCACATTTCATTAAAAATGTGTTATAAAAAAAAGCTTACTGCAAAAGAATATCATTGTAGTCAATGTACAAAAGTGTTCTTTTATAGAAGACAGTTTGATAAACATGTGGAAGGGCATAAGAGAAATAATTGTACTTATTGTGATACTAAAATTACCAGACGGAAAGAGCTGGAGCATCATCTGCTAAGTGTTCATTCTATCAAATTGGAACGTACTGTTTTATTCAAGTGTGAATATTGTGGAAAAAgATATGTGAAGAAGCGAAATTTGTATCATCATATGAAACAGCATgtggaaaacaaaattgtttgtaTGGAGTGCGGTTTTTTAAGCAACACTcctgaagaaaatgaaattcatttgaaagaaCACGAGAAAAATCGCCCTTGGAAATGCAAAAAATGCGATGATAGGTTTTCGAGAAGACAGCAATATTTATATCATATGAAaaggCACGACAGATACAAATGTGTGACATGTAAGGAGACTTTTGCCTCAAAAACCCGCGTTTTGAGACACAGGCAAAGAGGACATACTGTTGAAGGAGTGGAGCCCCAAAATAAATGTCCCCACTGCCCAAAAACATTCCAAAGAAAACTCAACTTACAAATTCATTTGCGAAAACATACAGATGAAAAGCTAATGTGCTGCAAATACTGTAATAAAAACTTTAGATCtccttatttatatttcaagcaCATGGCTTCAACATTTCACGAAATAAACTCCCCAGAAACCAAACAGTTAGTTTGTGAAAATTGCGGAAAATCTTTCGCCAAAAAACATCTGCTTGAGCAGCACTTACATCGGGTGCACAATCAAGCAAAACAAGCATTTACTTGCAAATTTTGTGGCTTAACGTCTTCTAATCGCACAAATATGGATCGTCATCTCACTTTGcatttagaaaacaaaaaagaagTTATTTGCGAACAATGCGGTCAAGCTTTTTACAACCAATTCAGTTTGAAAGACCATATTTCTTATGTGCATTCTCAAGAAAAGATTTTAAAATGCACGCAGTGCGATAAAGCGTTTAAAAGAAATTCAGAACTTGTTAGACACATGGCAACTCATTCAGAATTACGGCCTCATGTCTGCGAAACTTGCGGTATTTCTTACAAGAGACGAAATCATCTCAGAAGACACGTAGAATCTCAGCATGGCACTATCTTGAAAAATAGACGAGTACAACGTttaaaaaaaggtgaaaacgGGGAACTAATCCCTATTCCGCAAGAAAAAAAAACCAGAACTCCAAAGAAACCCGAATTAACGAGCCAACAACTATTTTCCATAATGGATGCTCAATCAGGAGAAATGTTAACATTCTCTTTACCAGAAAATATAGATAACCCAGATTCTCTGGCTATATTGAACATAACTCCAGATATAATTCAAGGAGTGGAGCTTccaaatttagttttaaatccaagtgataatattattttatcaaatgatactttagaaccaaattttttgaatgagttAGCTTCTTCTCAAATTGATTCATTTCTGCCGTCGCAAGTTTTGGCCCAACCTTTGACAGTACAGAATTCGACTACTTGTGATATTTTGCTGCCTGAAAATCGGATGCTGAATCTGCAGAGTGATTATTCACAGAATCCCTACAAGTTTTTGTag
- Protein Sequence
- MIHNFKSPEKDEAIGYLRKCINNEKKCLKKSYPEAMSSTSDDKTEGQPKRKARRRIKYKYNTFSSIKQKILRCRICGIINRTKASLLKHMSTHIGTPISCRTCRSDFNNRASYLCHISLKMCYKKKLTAKEYHCSQCTKVFFYRRQFDKHVEGHKRNNCTYCDTKITRRKELEHHLLSVHSIKLERTVLFKCEYCGKRYVKKRNLYHHMKQHVENKIVCMECGFLSNTPEENEIHLKEHEKNRPWKCKKCDDRFSRRQQYLYHMKRHDRYKCVTCKETFASKTRVLRHRQRGHTVEGVEPQNKCPHCPKTFQRKLNLQIHLRKHTDEKLMCCKYCNKNFRSPYLYFKHMASTFHEINSPETKQLVCENCGKSFAKKHLLEQHLHRVHNQAKQAFTCKFCGLTSSNRTNMDRHLTLHLENKKEVICEQCGQAFYNQFSLKDHISYVHSQEKILKCTQCDKAFKRNSELVRHMATHSELRPHVCETCGISYKRRNHLRRHVESQHGTILKNRRVQRLKKGENGELIPIPQEKKTRTPKKPELTSQQLFSIMDAQSGEMLTFSLPENIDNPDSLAILNITPDIIQGVELPNLVLNPSDNIILSNDTLEPNFLNELASSQIDSFLPSQVLAQPLTVQNSTTCDILLPENRMLNLQSDYSQNPYKFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -