Dqua010954.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:67783975-67785247[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1e-05 0.0021 20.3 1.5 1 23 116 138 116 138 0.98 2 10 1.5e-05 0.0027 19.9 3.8 1 23 144 166 144 166 0.97 3 10 9.4e-05 0.017 17.4 0.6 1 23 172 194 172 194 0.98 4 10 3.5e-05 0.0064 18.8 1.6 1 23 206 228 206 228 0.98 5 10 9e-05 0.016 17.5 2.8 2 23 232 253 231 253 0.97 6 10 1.8e-06 0.00032 22.9 1.6 1 23 266 288 266 288 0.98 7 10 0.00024 0.045 16.1 2.9 1 23 294 316 294 316 0.98 8 10 1.4e-06 0.00025 23.2 0.6 1 23 322 344 322 344 0.98 9 10 3.6e-07 6.6e-05 25.0 1.1 1 23 350 372 350 372 0.99 10 10 5e-06 0.00092 21.4 1.4 1 23 378 401 378 401 0.98
Sequence Information
- Coding Sequence
- ATGGCGGCGGCAATAACTGTCAATGATTTTTCAGTGATTACAGCAGAGGaagaaaatttggaaatcaaacaACTTTTAAATAATGATGCAAATGTTTTTTATAATATGGCCGATGAAAATAATACACAGGGTGACCAACTTGCAGTAAAACaagaacataattattttaaaggtattttaaatgacTTATTGGTTGAAAAGGAGGCTTATTTAATAACTGATAAGGAAAATGAAGCGGaAAATGTCAACAAAGTGGTTGACAATTTAGAGCCGTCCGACGACGAAAAAATCACGGAAATAGATCAAAGGgaaacaagaagaaaaaaaagGGAACGAGAAAGACCTTATCAGTGTCACATTTGCGGCCGTCGATTCGGACGCGGTTCTTTGCTAAAAGATCATTATACCGTCCATTCCGATGCCCGCCCTCACAAATGTAAAGTTTGCGACAGGACATTTAAAATGAAACGTTATTTGAGGGAGCATATGGATATACACAGCGGCGTACGCCGctataaatgtcaaatttgcaGTAAAACATTCGTACAAGCGAGCGTTTTTGGCGCGCATAAAAGATTGCACCGGAAAAAGCTGCACCCTGAGCCACCTGCTGTATTTGAGTGTACATCATGCGATGTTAAATATAAAAGCCGTTCTAATTTAGAAAACCATAAACTAACTCATCGTCAAATCAAATGTACAGTTTGTGACACAGTTTTTACGCACCGCAAATACTACGACATCCACATGAAGCGACATATTAGTGACGGTACTTACATAAAAGAAAAAGATGTGTTTTCATGCGACGCCTGCCCGAAAAAATTCTCCTACAAGGCCAATTTAAAGCGTCACAAACGAATTCACACCAATACCCGCCCCTACGAATGCCCCTGTTGCAAAAAGGCATTTTTTTACAGTAATAACCTCAAAGAACACCTCAGAATTCACACCGGCGACAAACCTTATCAATGCGCCACCTGTGGGAAGCGTTTTGCCCAAAGTGGGGACTTAAGCAAACATACGAAGCTACATTCAGAGGATCAACGATTCCAATGTGAAATTTGCCCGTATAAAAGCGCCCGGAGCGATTATTTAAAACGGCACATGAGGACGCACACCGGCGAAAAACGCTATTCTTGTAAATATTGTCAAAAACCGTTCAGCAAAATGGATAACATGAAAGCACACGTCAGAAAAATACACgaacaaaaaacataa
- Protein Sequence
- MAAAITVNDFSVITAEEENLEIKQLLNNDANVFYNMADENNTQGDQLAVKQEHNYFKGILNDLLVEKEAYLITDKENEAENVNKVVDNLEPSDDEKITEIDQRETRRKKRERERPYQCHICGRRFGRGSLLKDHYTVHSDARPHKCKVCDRTFKMKRYLREHMDIHSGVRRYKCQICSKTFVQASVFGAHKRLHRKKLHPEPPAVFECTSCDVKYKSRSNLENHKLTHRQIKCTVCDTVFTHRKYYDIHMKRHISDGTYIKEKDVFSCDACPKKFSYKANLKRHKRIHTNTRPYECPCCKKAFFYSNNLKEHLRIHTGDKPYQCATCGKRFAQSGDLSKHTKLHSEDQRFQCEICPYKSARSDYLKRHMRTHTGEKRYSCKYCQKPFSKMDNMKAHVRKIHEQKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -