Basic Information

Insect: Dromius quadrimaculatus
Gene Symbol: -
Assembly: GCA_963989225.1
Location: OZ022333.1:14028431-14038751[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.012 2.2 10.8 0.2 1 23 340 362 340 362 0.91

2 12 0.0085 1.5 11.3 0.8 2 23 365 387 364 387 0.95

3 12 5.7e-07 0.0001 24.4 1.4 2 23 459 480 458 480 0.97

4 12 0.00013 0.023 17.0 0.3 1 23 486 508 486 508 0.97

5 12 0.00014 0.025 16.9 1.7 1 23 514 536 514 536 0.98

6 12 2.4e-06 0.00044 22.4 1.4 1 23 542 564 542 564 0.98

7 12 0.00065 0.12 14.8 1.4 1 23 570 592 570 592 0.98

8 12 4.6e-06 0.00084 21.5 0.4 1 23 600 622 600 622 0.98

9 12 0.003 0.56 12.7 0.2 1 23 628 650 628 650 0.96

10 12 1.3e-05 0.0024 20.1 1.1 1 23 656 678 656 678 0.98

11 12 9.7e-05 0.018 17.4 0.4 1 23 684 706 684 706 0.98

12 12 1e-05 0.0018 20.5 2.3 1 23 712 734 712 734 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.012	2.2	10.8	0.2	1	23	340	362	340	362	0.91
2	12	0.0085	1.5	11.3	0.8	2	23	365	387	364	387	0.95
3	12	5.7e-07	0.0001	24.4	1.4	2	23	459	480	458	480	0.97
4	12	0.00013	0.023	17.0	0.3	1	23	486	508	486	508	0.97
5	12	0.00014	0.025	16.9	1.7	1	23	514	536	514	536	0.98
6	12	2.4e-06	0.00044	22.4	1.4	1	23	542	564	542	564	0.98
7	12	0.00065	0.12	14.8	1.4	1	23	570	592	570	592	0.98
8	12	4.6e-06	0.00084	21.5	0.4	1	23	600	622	600	622	0.98
9	12	0.003	0.56	12.7	0.2	1	23	628	650	628	650	0.96
10	12	1.3e-05	0.0024	20.1	1.1	1	23	656	678	656	678	0.98
11	12	9.7e-05	0.018	17.4	0.4	1	23	684	706	684	706	0.98
12	12	1e-05	0.0018	20.5	2.3	1	23	712	734	712	734	0.99

Sequence Information

Coding Sequence: ATGGCTAGGAATCTGACCGAAAATTTTAATGAACTGTGTAGACTTTGtgcatcaaaaattaatttattgattggaataaatatattccaaGGTGAAGGCAGCCTGCGAGAAATTAGTAAAAAAATTTCTACTTGTCTGCCCATTCAGGTTCATGAAACGGATCGTCTTCCTAAAATGATTTGCAGTGAATGTGTCTACAAACTTGATGTATGCTTTCAGTTTCATGAGAAATGTATTGACACCGAAAATttgttcattgaaattattagaatcaATAGATCTaaattagaagaaataaaagaatcaaAGAATATAAATCTAGTTCCAACAGTTGAAGATCgacaaattcaaattgtccAGAACCCGCAAGAATTGCTTGACCATTCTTTGCCACATGAATTGGCCGGAAATAGAGAAAATTTGATGGTCGGTCAGCAGATTATTTTAAACACTGATGACAATATTGTTATGCATAGCCATGAACtagataatattgaaattactcCTCATGAATTAAATTCCCACGACATGACACATGATAATATTCACGCTCAACAGTTAGATCTGCACCATGAATCGACGATGGCACAATTAGTTCAACCAGATCTGCAGATATCTGAAACTCATCTTGCTgttcaaaatttggaattaattCACACGCAACATAATTTAATTGCCAATCACTACGAACCTGTTCATAACAAAAGTATTACAAGTGATAActgcatacaaaataatattttaagcCCAAAGGATCAAAGAGAATCTGTAAAGGTTGAAACTATAAAGTCTGAAAACCAAAATGAATTGATTATTAAAACTATGTACAGTGATGCATCAGCCTCTGATTCCAGTGATACAGATTATGATGCTAATTTAGAAACTAGAAATGGTGAATTAGTAAAAAATGATGAAAGTAATGACGTGACACATAACATGTATGAAGAACAAAATCAGTTTATTTTAAGTACTGCAGAGACAGAGGTTGGTACTTCTGACAATACCGaatcaaatgaatattattgcaATGTTTGTGGAAAAACTATTACTGGCAAAGAAGATTATTTAGATCATTACGGTGATCATGTGAACAAATGTTTATTGTGTGATGAGGATTTTTCCAacatagaaaaattgaaaatacataGGAAACAAACACATTCACGGACTTCTAGTAatATTTCCATTCGGCGTTGCATAAAAAAGGATCCACTCGATGATGATaatttcttcaaagaagaaacTAGTGATGATGAGAATAATGCGAGTCAAGAAAACTCATCTGAATTTATCAACGAAAATGATGAAGATGAAGATGTCGACGATATTGAGGATAATAACAAGAATACTAAAAGAAAACGCTGGGAGCCTAAAGTTTGTAAAGAATGTGGTAAAAGCTATAAAACTAACTATAAATTGGCGGAACATATGAGAAAACATACTGGAGAACAACCCTTCAAATGCAGTATGTGTGAAAAAGCATTTAGGAGTAAAATTGGCCTCGCACAGCATGAAGCAAAACATACAGgacaatatgatttttcatGTCCCACGTGCGGTAAAGGATTTCAGTGCAAAAGCTATTTAATCGTACATCAACGAGTTCATAGTAATTTGAAACCGTTTCCGTGTTCGCAGTGTGGAAggaatttcaaaacaaaacagTCACTGCTAGATCATATGAACAGGCATTTAGGTGTTAAACCATTTATGTGTGACATATGCGGAAGAGGTTTCATCACAAAAGGTTTATGTAAATCGCATCAAAAAGTGCATAGTGGTAGAGACAATCGACAATATCCATGCACAGTTTGTAATAAATTGTTTGTAAGCAAAAGTTATCTCGCAACACATTTAAGAATtcatactggtgaaaaacctTTTATGTGTGAGGTTTGCGGAAAAGGATTCTTAACAAGAGTGGATCTTCGAATCCATTCTACTATGCACACTGGAGAAAAATCATTTGTCTGTGAAATTTGTGGTAAAGCATTTGCAAGAAGAGATGCTTTAAGATGCCATCGAAGATCACATACTGGAGAGAGGCCTTACAGatgtgATATTTGTGGTCAAACATTCACTCAGTTTTCACCTATGGCTATTCATAAAAGATTACATACTGGAGAAAGACCGTATACGTgcgaagtttgcaataaatcattcgtATCTCGTTCCACAATGATGTCACATCGTAAAAAACACGTcccttaa
Protein Sequence: MARNLTENFNELCRLCASKINLLIGINIFQGEGSLREISKKISTCLPIQVHETDRLPKMICSECVYKLDVCFQFHEKCIDTENLFIEIIRINRSKLEEIKESKNINLVPTVEDRQIQIVQNPQELLDHSLPHELAGNRENLMVGQQIILNTDDNIVMHSHELDNIEITPHELNSHDMTHDNIHAQQLDLHHESTMAQLVQPDLQISETHLAVQNLELIHTQHNLIANHYEPVHNKSITSDNCIQNNILSPKDQRESVKVETIKSENQNELIIKTMYSDASASDSSDTDYDANLETRNGELVKNDESNDVTHNMYEEQNQFILSTAETEVGTSDNTESNEYYCNVCGKTITGKEDYLDHYGDHVNKCLLCDEDFSNIEKLKIHRKQTHSRTSSNISIRRCIKKDPLDDDNFFKEETSDDENNASQENSSEFINENDEDEDVDDIEDNNKNTKRKRWEPKVCKECGKSYKTNYKLAEHMRKHTGEQPFKCSMCEKAFRSKIGLAQHEAKHTGQYDFSCPTCGKGFQCKSYLIVHQRVHSNLKPFPCSQCGRNFKTKQSLLDHMNRHLGVKPFMCDICGRGFITKGLCKSHQKVHSGRDNRQYPCTVCNKLFVSKSYLATHLRIHTGEKPFMCEVCGKGFLTRVDLRIHSTMHTGEKSFVCEICGKAFARRDALRCHRRSHTGERPYRCDICGQTFTQFSPMAIHKRLHTGERPYTCEVCNKSFVSRSTMMSHRKKHVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -