Dqua009439.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:41330070-41331308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.9 5.3e+02 3.3 0.3 10 23 2 15 1 15 0.90 2 14 0.00013 0.024 17.0 0.2 1 23 21 43 21 43 0.97 3 14 3.5e-06 0.00064 21.9 1.6 1 23 49 71 49 71 0.98 4 14 5.6e-06 0.001 21.3 0.3 1 23 77 99 77 99 0.98 5 14 0.081 15 8.2 0.3 7 23 111 127 105 127 0.84 6 14 0.0092 1.7 11.2 0.4 1 23 133 155 133 155 0.92 7 14 7.9e-07 0.00014 23.9 2.9 1 23 168 190 168 190 0.98 8 14 7.3e-05 0.013 17.8 1.1 1 23 196 218 196 218 0.95 9 14 0.00013 0.024 17.0 2.5 1 23 224 246 224 246 0.98 10 14 2.8e-05 0.0051 19.1 2.3 1 23 252 274 252 274 0.96 11 14 1.4e-05 0.0026 20.0 2.1 1 23 280 302 280 302 0.97 12 14 1.5e-05 0.0027 20.0 1.4 1 23 308 330 308 330 0.96 13 14 3.9e-06 0.0007 21.8 0.7 1 23 336 358 336 358 0.96 14 14 0.00012 0.021 17.1 0.1 1 23 371 393 371 393 0.96
Sequence Information
- Coding Sequence
- ATGTTCGTTCAGAGAAATGATTTAAGAAGACACGAATTTATTCACGGCAATGAAAAACCCTACGCATGTGATGTCTGTCAAAAAACATTTGCTGAAAGTGGTAGATTGGAAAGACACAAACTTATTCATACCGGTGAGAGACCACATGAGTGCGATATCTGTCAAAAAACATTTGCTGAAAGTGGTACATTAAAAAGACACAAACGTATTCACACCGGTGAAAAACCGTATCAATGTGATATCTGTCAAAAAAGATTCGTACTGAAAGGTACTTTAAATGTACATCAACTTGTTCATGTCGGTCAAAAACCATTCGAATGTGATGTTGGCGAGAAAACTTTCACAGAGAGTAGAACTTTGAAGAAACACAAACTTAGCCATAGTGATCCGAAACCATATGCTTGTGGATGTTGTCAGAAAACGTTCGTCGAAATAAGTGATTTGGAGAGACATGAACTTATACACAACGGTGGAAAACCGTATCATAGTAGTGAAAAACAATACACCTGTAATATGTGTCAGAAATCTTTTGTTTCCAGTAGTTACTTGAAGAGACACAAACTAAGTCATAGTAATGAGGGACACTACTCGTGCGATGTGtgtcaaaaatcatttaaatggaGAAGTAATCTTGAAAAACATGAATTTATACATAGTGGAGAAAAACCATATGCTTGTGATATGTGTGAAAAAACATTCGCTTGCAAAGTTTATTTAAAGAGACATCAACGAATTCATAATGGCGAGAGACCTTATTCATGTGACATCTGCCAAAAAACATTCTCCCTTAGAACAAATTTAAAGAGCCACAAATTCATTCACAGTGGCGAAAAACCGTATGCTTGTAatgtttgtcaaaaaaaattcgCTCGGAGAGTACATTTACAGACACACAAACTTATTCACAGCGATCAAAAACCATTTGCCTGTGATGTCTGTCAGAGAACATTCGCACAAAAAGGTCATTTGGAAACTCACAAACTTAGTCACACCGGTATGAAACCATTTCAGTGTAATGTCTGTCAGAAGGCGTTCACAACGAGAGGTTCTCTAAATACACACAATCTCATTCACTTCCGTGAGACACTTGGACAGTGTGAcgataaattatttgtttgtaatatCTGCCGGAAAAAATTTGTAGATATTGTCAATTTGAGAATACACAGTATTATTCACACAAGCTTATTTACACATGTAATATCAGATGGCGAAACTttaaaaaaactcaaatcataa
- Protein Sequence
- MFVQRNDLRRHEFIHGNEKPYACDVCQKTFAESGRLERHKLIHTGERPHECDICQKTFAESGTLKRHKRIHTGEKPYQCDICQKRFVLKGTLNVHQLVHVGQKPFECDVGEKTFTESRTLKKHKLSHSDPKPYACGCCQKTFVEISDLERHELIHNGGKPYHSSEKQYTCNMCQKSFVSSSYLKRHKLSHSNEGHYSCDVCQKSFKWRSNLEKHEFIHSGEKPYACDMCEKTFACKVYLKRHQRIHNGERPYSCDICQKTFSLRTNLKSHKFIHSGEKPYACNVCQKKFARRVHLQTHKLIHSDQKPFACDVCQRTFAQKGHLETHKLSHTGMKPFQCNVCQKAFTTRGSLNTHNLIHFRETLGQCDDKLFVCNICRKKFVDIVNLRIHSIIHTSLFTHVISDGETLKKLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -