Dqua031796.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022328.1:61222999-61228342[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 5.1e-05 0.0093 18.3 2.2 1 23 367 389 367 389 0.97 2 20 1.5e-05 0.0027 19.9 1.2 1 23 397 420 397 420 0.98 3 20 7.7e-05 0.014 17.7 3.9 1 23 426 448 426 448 0.97 4 20 0.00033 0.06 15.7 4.1 1 23 454 477 454 477 0.95 5 20 2.8e-06 0.00051 22.2 1.2 1 23 512 534 512 534 0.98 6 20 6.9e-06 0.0013 21.0 1.0 1 23 540 562 540 562 0.96 7 20 0.00025 0.046 16.1 0.5 1 23 568 591 568 591 0.97 8 20 7.6 1.4e+03 2.0 1.2 1 19 603 621 603 623 0.82 9 20 0.00017 0.03 16.6 0.5 2 23 631 653 630 653 0.94 10 20 2.2e-05 0.004 19.4 0.8 1 23 659 681 659 681 0.98 11 20 3.9e-05 0.007 18.6 0.8 1 23 685 707 685 707 0.98 12 20 8.6e-06 0.0016 20.7 1.6 1 23 710 732 710 732 0.97 13 20 0.00024 0.044 16.1 0.7 1 23 738 760 738 760 0.99 14 20 0.00074 0.13 14.6 5.1 1 23 764 786 764 786 0.98 15 20 0.00092 0.17 14.3 0.1 1 23 792 814 792 814 0.98 16 20 0.0029 0.54 12.7 4.5 1 23 820 842 820 842 0.97 17 20 0.0035 0.64 12.5 0.2 1 23 848 870 848 870 0.96 18 20 0.00066 0.12 14.8 0.3 1 23 876 898 876 898 0.98 19 20 3.8e-05 0.0069 18.7 1.9 1 23 904 926 904 926 0.98 20 20 0.00037 0.067 15.6 1.1 1 23 932 954 932 954 0.98
Sequence Information
- Coding Sequence
- ATGGCATCTAATTGTTGTGTGCCAATGTGCAATTCTTTAAGAAAAAAGAATCCAGCAAtaagtttccataaatttcctaataatttggaaaaaattagtttcaaaaataattatgggGTATTCGAGTCTGTGAATAAAAAGAATCTTTGGGCCAGCaaactgaaaataggcaaaaaaaTTAGCCCATACATGAGAGTGTGTTCTCttcatttcaatgaaaatgaCTTTTTCACTGttcgacatcgaaagaatttgaagaaaaatgcagTACCTTCACTTAACTTGCCGCAAGTTGTTCATGGCAGTTCATCATCAGCTCAATTTTCATCTAAAACTACATTAGCTTCAGCGCGTGGAGAACGTTTGGCCATGAGGACTAAAGTAAAGGAAGAAATTGGCATTCCGATTTCTGAGAATTTGTGTGAAGTGGAAATAGAAgatgaaaaaattgtagaatgcTTAAATGAAAGTGAAATTGAAGCTGCGAATACTTTATTATCATTGATGCAAACAGACgttgaaaattcaaatcaaaagaCTTTCCGTGATTTTGAAGTACAAGTAAATATGCCTAGGAAGTATACGCTATGTGATTTTATTACATCAGATGCATCTTTGACAAGTTTAACTGGAATACGTAGTCATCagttattgaacaaaattgtttcaaatGAATTTGTGCAGAAAATGGAACCAAATATCagagaaagaaaaaatttatctaTAATAATGACTGGTATTAAAAGTGAAAGAAAGTATGAAATATCCAATGACAGCCAAGAAAAAAATGACAATGCTCCAGAAGAATTAAACTTCCAAATAGATATTAAGATTGATATGCCTGatttaattcatgaagaattaataataaaggaAGATTTGGAGGACGTCGTGCAAGAAGATTGTTTGGAAGTGAGCTCAGAGCATTTTCACAGTACATATGAGCTTTCCAACGTTGATGAAGAACGAAATGAACTATCTCCTGGGAATTCTGATATTAGTGAATATGATTCACAATCAACATCTACCAGTAACACTGATAGTGATACTGATGAAAGGAAGGATCAGCATGTAAACAGTCAGACAGGCACTAAAAAATATTCGTGTGATAAATGTCAAAGAACATTTACTCAATTAGGTACGCTGACTAAGCACAAAACAATCCATATTCCCAGCGATATTAAACCATATTCATGTGAAGTCTGTGAGAGAAAATTCCGTGTGGAACAAAATCTTCAGCGtcacataaaaaaaaatcatgataacATAAAACCATTCGTGTGTAAAATATGCCGAAAAAGATTCACTGAAATGTCTCATCTAAGAAGACACAAGCTCATCCATAGTGGTAAAAGACCATATTCATGTGATGTATGCCAAAAGGCATTCACTTATCAATGTACTCTTAAGAAACACAAAAATCAAGTTCACAGTAACATTCGGCGATATTCGTGTCAGGTCTGTCAGAAAAAATTTCGCCTGAAGCATAATCATCTTTGTCACATGAAAGAAAAACATGGTGACATAAAACTATTTACTTGTGATATATGCCAGAAAGCATtcactgaaaattatttgctcAATAGACACAAGCGCATCCATAGTGGTGTAAGACCATATACATGTGATGTATGTCAGGAAACATTCAGTCAGGCTGATCATTTAAACCGACATAAAGGTATTCACAGTGGCATTAAGCCATACTCGTGTGATGTCTGTCAAGAAAAATTTCGTCTGAAAGAAAGTCTTGTGAATCACATTAAAAATCTTCATGATAGCATAGAATCATCCACTAAAAGTACTTTGTACTCGTGTATTGAATGTAAGAGAACATTTTCTGACGGGGCTCGTCTAGATAGTCATAAGTGCTTTGACATTGGCCCAAGACTTGAATGTGATGTATGTCGTAAAACATTCGCTAATCAAGATTATCTTGACAGACACAAAAGTCGAGTTCACAGTAACAATCAACGATATTCGTGTGAtgtatgtcaaaaaaaattcattcgtGCGATTAGTTTAGAAAAACACAAGCGTCTCCACATCAAATCGTTTTCGTgtaatttatgtgaaaaatcaTTTTCTTTGAGGGTAGATCTTATTGAACACAAGCGCACCCACAAACGTTTCACATGTGATGTATGCCAGAAAAAATTTGCTCAGCGTCGTAATCTAGAACGGCACAAAAGTATTCACACTGACATTAAGCCATACTCGTGTGATGTATGCCAAAAAAAATTCGCTCTTGATGAAGCTTTAAAAAATCACAAGCGTACCCACGAAAGACCGTTTTCGTGTGATGTAtgtaaaaaatcattttctCACATGTTTTATCTCGATCAACACAAGCGCACCCACAGTGGTATAAAACCATACACATGTGATGTATGTCAGGCAGCATTCGCTCAGGGTGGTCAATTAAGCCGACATAAAAAAATTCACACTGGCATTAAACCACACTCGTGTGATGTATGTCAGGCAACATTCTTTGAGGCTTATCATTTACGCCGACATAAAAATACTCACAGTGGCAATAAACCATACGCGTGTGATCTATGTCAGGCGACTTTCTTTGAGGCTTATGATTTAAACCGACATAAAATTATTCACAGTGGCATTAAACGATACTCGTGTGATTTATGTCAGGCAGCATTCACTTATTCTGGTGAATTAAGCACACATAAAAAAATTCACAGTGGCATTAAACCATACTCGTGTGATGTATGTCAGAAAACATTCTTGCGGTCTTCTCAATTAAAGCGACATAAAATGATTCACAGTGGCATTAAACCATACTCGTGTGATGTCTGTCAAAAAAAGTTTATCGAAAACAATAAGCTCcagattcataaaaaaattcatgatagAAAACCGCCCGCGAGTGAAATACTTAAAGAAGAAAATATCTcatga
- Protein Sequence
- MASNCCVPMCNSLRKKNPAISFHKFPNNLEKISFKNNYGVFESVNKKNLWASKLKIGKKISPYMRVCSLHFNENDFFTVRHRKNLKKNAVPSLNLPQVVHGSSSSAQFSSKTTLASARGERLAMRTKVKEEIGIPISENLCEVEIEDEKIVECLNESEIEAANTLLSLMQTDVENSNQKTFRDFEVQVNMPRKYTLCDFITSDASLTSLTGIRSHQLLNKIVSNEFVQKMEPNIRERKNLSIIMTGIKSERKYEISNDSQEKNDNAPEELNFQIDIKIDMPDLIHEELIIKEDLEDVVQEDCLEVSSEHFHSTYELSNVDEERNELSPGNSDISEYDSQSTSTSNTDSDTDERKDQHVNSQTGTKKYSCDKCQRTFTQLGTLTKHKTIHIPSDIKPYSCEVCERKFRVEQNLQRHIKKNHDNIKPFVCKICRKRFTEMSHLRRHKLIHSGKRPYSCDVCQKAFTYQCTLKKHKNQVHSNIRRYSCQVCQKKFRLKHNHLCHMKEKHGDIKLFTCDICQKAFTENYLLNRHKRIHSGVRPYTCDVCQETFSQADHLNRHKGIHSGIKPYSCDVCQEKFRLKESLVNHIKNLHDSIESSTKSTLYSCIECKRTFSDGARLDSHKCFDIGPRLECDVCRKTFANQDYLDRHKSRVHSNNQRYSCDVCQKKFIRAISLEKHKRLHIKSFSCNLCEKSFSLRVDLIEHKRTHKRFTCDVCQKKFAQRRNLERHKSIHTDIKPYSCDVCQKKFALDEALKNHKRTHERPFSCDVCKKSFSHMFYLDQHKRTHSGIKPYTCDVCQAAFAQGGQLSRHKKIHTGIKPHSCDVCQATFFEAYHLRRHKNTHSGNKPYACDLCQATFFEAYDLNRHKIIHSGIKRYSCDLCQAAFTYSGELSTHKKIHSGIKPYSCDVCQKTFLRSSQLKRHKMIHSGIKPYSCDVCQKKFIENNKLQIHKKIHDRKPPASEILKEENIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -