Dqua050892.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022333.1:6578670-6580778[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.3e-05 0.0043 19.3 4.8 1 23 37 59 37 59 0.98 2 23 6.6e-05 0.012 17.9 1.5 1 23 66 88 66 88 0.98 3 23 0.00015 0.027 16.8 1.4 3 23 97 117 95 117 0.96 4 23 0.00011 0.02 17.2 4.5 1 23 122 144 122 144 0.96 5 23 0.0029 0.53 12.7 8.0 1 23 150 172 150 172 0.99 6 23 0.019 3.5 10.1 0.2 1 23 178 200 178 200 0.94 7 23 4.2e-06 0.00077 21.7 3.1 1 23 206 228 206 228 0.98 8 23 0.00023 0.043 16.2 0.2 2 23 235 256 234 256 0.97 9 23 4e-05 0.0073 18.6 1.0 1 23 262 284 262 284 0.97 10 23 6e-05 0.011 18.0 6.8 1 23 290 312 290 312 0.98 11 23 0.0005 0.091 15.1 0.1 2 20 319 337 318 339 0.92 12 23 0.00019 0.035 16.5 1.0 2 23 347 368 346 368 0.95 13 23 0.0015 0.27 13.7 0.5 1 23 373 395 373 395 0.96 14 23 9e-05 0.016 17.5 1.3 1 23 413 436 413 436 0.96 15 23 1.1e-06 0.0002 23.5 0.2 2 23 444 465 443 465 0.96 16 23 4.4e-05 0.008 18.5 1.6 1 23 471 493 471 493 0.96 17 23 0.00042 0.077 15.4 0.1 1 23 499 522 499 522 0.97 18 23 8.8e-05 0.016 17.5 2.3 1 21 530 550 530 552 0.95 19 23 0.0018 0.33 13.4 2.0 1 23 558 581 558 581 0.96 20 23 2.7e-07 4.9e-05 25.4 0.1 1 23 587 609 587 609 0.98 21 23 6e-05 0.011 18.0 6.7 1 23 615 637 615 637 0.98 22 23 1.7e-05 0.0031 19.7 1.3 2 23 643 664 643 664 0.97 23 23 0.00011 0.019 17.3 0.7 1 23 669 691 669 691 0.98
Sequence Information
- Coding Sequence
- ATGGAAGAAGGCGATTCAAATAAATGCATTGAGATAGATACCAAAGAAGATActgatgaaataaatatattacaaacATCTATTGTAGAAGATCCGTTTTTGAAACGATTCCCTTGTAAAATTTGCAGAAGAAGTTACCGATTTCGGAGTAGTTTATTACATCACATGAGAAGACATCCAACAAGAAAACAATATTATGAATGTAAGAGGTGTagtaaaatgtttataaaacctCATAATTTTATCCAACATATAGCTATTCATGACAGTGATAATATTCCGATTTGTTGCCCCTTATGTGACGAAATTTTCCCACAATCAAAGCATTTAAAACTACATCTTTCagtacataaaaaaatatcatattcttgTAAATTTTGCCAGAAAGAGTTTATCCGCAAGGCTCATTTGCAGCGCCATGAGTTTAGTCATACAGGAGAAAAACCATTTCAGTGTAAAGAATGTAGGAAATGTTTTACGTGTAACGAATATTTATCAGAACATATGAAAACGCATGATAGTAGCAAACCTTTCAATTGCGAATTGTGTAATAAGAAATTTCCAAATGCCGCGATTTTAGATGAACATTTAAGTCGCCATGATTCCGATCGGCCGTACCCGTGCGACTATTGCGAGAAAACCTTTCACCGCAGATCGGAATTGAGAAAACACGAAAAAATACATACTCAAAAACGAAATGTACCATGTCCCAACTGTAAAAGGCTTTTTTACAGTAATGCTCAATTAGGAGTGCATATGAAAACTCATTCGGaagacaaaaattttatttgtgcAATTTGTCAAAAGAAATTTGACTTTTTATCCCAATTGGAGCGTCATTCTAGAATGCATACAGGGGAAAGACCATTTCATTGTAAAGTTTGTAGCAAAGATTTTATGAGTTCGTCGCATTTATATCGACATATGAGGTCCCATAATGTAAAACCAGATTTAAACTGTGATATATGTAATAGAACTTTTAAAAGAATGGCTTATTTGGTAAAACATCGGGAAATATgtaaaaatgaaagaattttggaatgtgatatttgtgaacataattttaaaactaCTTCTGAATTAGAGCGGCATAAAGAAATTCATGAGGATGCCATATTTCAGTGCAATATGTGCAACGAAAGATTTAATAACGATTTAAGTTTGAATGACCATTTACTTGATCATGATGATACATCTATTGATTTTTCCCCTTTTTTTACTCATGAAGAAAAATCATTTGCCTGTAAATTGTGTGACAAAATATTTCCTTCAAGATCAAAATTCGATCGGCACTACAGAAACATTCACCTAATAGTCCCCAAATCTTTACCATGTCCAATTTGCCCAAAATTCTTCCGAAATAGCACTGAACTAAAAGCTCATGTAAAGAGGCACGCAAATTTAAAGCCTCATATCTGCCAACTTTGCGACCGAGCTTATACATCCAAAGCTCAGCTTTTGCGTCATACAAGACTGCATTCTGGGGAAAGACCATTTGTAtgtgaaatttgtcaaaaagCTTTTGCCCTTGAAGCAGAAATGACTCGTCATGTAAAAATTAGACACATGGGGGAAGGAAATCGAAATTTTCCGTGCACTTTATGCGACAGAAGGTTTTCAACTAAAGCTCAGGTAGAACGACATATCCGGTGTCACACTGGGGAAAGACCGTATGATTGTGAACAAtgcgaaatgaaatttaaaggCCTGTATGAGTTACAGAGGCATTTTAAGAAAAAACATACCGATGAACGGCCTTATGAATGCCCAGACTGTCAGAAAAAATTTATCAGTAATGCGGAATTAAATCGACATATTATAGTTCATTCTGGTATCCGGGCTCATAAATGCACGCAATGTCAAAAATCgttttttaatcaaaatgaaCTCAACCGTCACAAAAAAACTCATGAGGAATATAGAAATGTTTGCCATATTTGCGCGAAAAGCTTTAGTACCACTGAATTATTAAACCGACACATAGAAAGGCATAATAGTAGCCCATattattgtgaaatttgtaGCAAAATTTGTGGATCCAAAATTCAACTAGCCAGGCATATGCTTATTCACAATAGTTTTAATGATGGATCAGGTACTTCTTgttaa
- Protein Sequence
- MEEGDSNKCIEIDTKEDTDEINILQTSIVEDPFLKRFPCKICRRSYRFRSSLLHHMRRHPTRKQYYECKRCSKMFIKPHNFIQHIAIHDSDNIPICCPLCDEIFPQSKHLKLHLSVHKKISYSCKFCQKEFIRKAHLQRHEFSHTGEKPFQCKECRKCFTCNEYLSEHMKTHDSSKPFNCELCNKKFPNAAILDEHLSRHDSDRPYPCDYCEKTFHRRSELRKHEKIHTQKRNVPCPNCKRLFYSNAQLGVHMKTHSEDKNFICAICQKKFDFLSQLERHSRMHTGERPFHCKVCSKDFMSSSHLYRHMRSHNVKPDLNCDICNRTFKRMAYLVKHREICKNERILECDICEHNFKTTSELERHKEIHEDAIFQCNMCNERFNNDLSLNDHLLDHDDTSIDFSPFFTHEEKSFACKLCDKIFPSRSKFDRHYRNIHLIVPKSLPCPICPKFFRNSTELKAHVKRHANLKPHICQLCDRAYTSKAQLLRHTRLHSGERPFVCEICQKAFALEAEMTRHVKIRHMGEGNRNFPCTLCDRRFSTKAQVERHIRCHTGERPYDCEQCEMKFKGLYELQRHFKKKHTDERPYECPDCQKKFISNAELNRHIIVHSGIRAHKCTQCQKSFFNQNELNRHKKTHEEYRNVCHICAKSFSTTELLNRHIERHNSSPYYCEICSKICGSKIQLARHMLIHNSFNDGSGTSC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -