Dqua009438.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:41311284-41331308[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.0019 0.34 13.3 3.4 5 23 108 126 105 126 0.94 2 34 0.003 0.55 12.7 3.1 1 23 132 154 132 154 0.97 3 34 2.9e-06 0.00053 22.2 0.9 1 23 160 182 160 182 0.97 4 34 2.9e-05 0.0053 19.0 0.8 1 23 188 210 188 210 0.98 5 34 1.1e-05 0.002 20.4 0.6 1 23 216 238 216 238 0.98 6 34 3e-05 0.0054 19.0 0.5 1 23 244 266 244 266 0.97 7 34 0.3 55 6.4 2.2 1 23 272 294 272 294 0.98 8 34 3.9e-05 0.0072 18.6 3.3 1 23 369 391 369 391 0.96 9 34 5.3e-05 0.0096 18.2 0.2 1 23 397 419 397 419 0.97 10 34 1.3e-06 0.00023 23.3 1.8 1 23 425 447 425 447 0.98 11 34 2.3e-06 0.00042 22.5 1.7 1 23 453 475 453 475 0.99 12 34 1.8e-05 0.0033 19.7 1.7 1 23 481 503 481 503 0.94 13 34 7.2e-06 0.0013 20.9 0.8 2 23 510 531 509 531 0.96 14 34 5.3e-06 0.00096 21.4 0.9 1 23 537 559 537 559 0.97 15 34 1.5e-05 0.0027 19.9 1.0 1 23 565 587 565 587 0.96 16 34 9.6e-06 0.0018 20.5 2.1 1 23 593 615 593 615 0.98 17 34 8.4e-05 0.015 17.6 0.9 1 23 621 643 621 643 0.97 18 34 1.3e-05 0.0023 20.2 1.1 1 23 649 671 649 671 0.98 19 34 2.5e-05 0.0045 19.3 5.8 1 23 694 716 694 716 0.98 20 34 0.0013 0.24 13.8 0.8 1 23 722 744 722 744 0.96 21 34 7e-05 0.013 17.8 1.2 1 23 750 772 750 772 0.95 22 34 0.00044 0.08 15.3 0.2 1 23 778 800 778 800 0.97 23 34 1.2e-05 0.0022 20.3 1.6 1 23 806 828 806 828 0.98 24 34 1.9e-05 0.0034 19.6 0.3 1 23 834 856 834 856 0.98 25 34 0.27 49 6.5 0.3 7 23 868 884 862 884 0.84 26 34 0.031 5.6 9.5 0.4 1 23 890 912 890 912 0.92 27 34 2.7e-06 0.00049 22.3 2.9 1 23 925 947 925 947 0.98 28 34 0.00025 0.045 16.1 1.1 1 23 953 975 953 975 0.95 29 34 0.00045 0.081 15.3 2.5 1 23 981 1003 981 1003 0.98 30 34 9.3e-05 0.017 17.4 2.3 1 23 1009 1031 1009 1031 0.96 31 34 4.8e-05 0.0087 18.4 2.1 1 23 1037 1059 1037 1059 0.97 32 34 5e-05 0.009 18.3 1.4 1 23 1065 1087 1065 1087 0.96 33 34 1.3e-05 0.0024 20.1 0.7 1 23 1093 1115 1093 1115 0.96 34 34 0.00039 0.071 15.5 0.1 1 23 1128 1150 1128 1150 0.96
Sequence Information
- Coding Sequence
- ATGGACAATTTCTTTGTGGAAAAAGAAATTGAGcaaattatgataaaagtagAACCAGATATTGACATGCAATATATGACATATGAAGATTCGTTAGATGATTCTTGTATGAGGAAAGAAGAtatgaaatgcgagaattatatggaaaataattttttagaaatgaATGATCAATTTGAACAAGAACATTCCTACGACACAAGTGTCGATTCAGAAGAAAATCAAGATAAATATGATTCTGGAAAAGATATTTTAAGTGGAACAgATTCTCTTAAACGATTAAACAATATCACAACAGAAGAACGGCAACAGGACTGTATTATATGTCATAAAACATTTAAGAATTTAAAATCTTTAAATACTCACAAACGAATCCATAGTATTGAGAAACCTCATGTCTGCGATATTTGTcagaaattgtttattttaaaaaaacatttaGAGAGACACAAACTGATTCACAGTGGTGAGAAACCATACTCCTGTGATGTTTGTCAGAAAGCTTTTACAGAGAATAGTAATTTGAAGAAACACAAACTTATACATAGCGGTGAAAAACCATTCTCTTGTGATGTCTGCCAGAGAACATTTGTGGAAAATGCTACTTTAATAAAACACAAACGCACTCACACTAAAGAGAAACCATATGTGTGTAATGTCTGTGAGAAAACATTCGGACAAATAACTAATCTAATGAGACATAAACGTATTCACAGCGGCCACAGACCATACTCGTGTAATGTTTGTCAGAAAACATTCGCAGCGGGTAGTAATTTGAAAAGACACCAACTTCTCCATAGAGTAGAAGAAGTGTACACTTGTGATATctgtcagaatttttttttttgtgatgatGATTTGAAAAAACATATACTTATTCACAGCAGTGAAGAATCATATGAGAAGAATTTACAGGATCTTAACatactagagaaacaatttaTGTGTAGTAAGTATCAAAAAACATTTGCAGGTTCTCATGTGACATTGAACAATATTAACCACGCCGGAGAGCGATCCTATGAATATACTAAAAATCAGAAAATATGTAAAGATTTCAAGTCTCTGGATATTCACAAAAGAATTCACAACAGTGATAGACCTTATGCGTGTGATGTCTGTCTCAAAACGTTCACACAGAATAGTCATTTGAAGAAACACAAAATCTATCATAGCGGTGAGAAACCATTCGTTTGTGATATCTGTCAAAAGGCATTCGTACAAAAAAGTGTTCTAGAAACACACAAACTTATACACAACGATAAAAAATCATTCGTATGTGAAGTTTGCAAGAAAGCATTTGTGCAGAAAGTTCATTTGAAGACACATCAACGTATCCATACCGGCGAGAGACCATACACATGTGATATCTGTCAAAAAACATTTGCAGAAAATAATactttaaaaaaacaccaaaatACTCACACCAACGAGAGACCATATGAATGCAAAATCTGTCAGAAAACATTTAAACAGATTGGTAACttgaagaaacataattttatcCACAGCAAGGAGAAACCAAACCAATGTGATGTCTGCCAAAAAACGTTTGTACATAAAGATAATTTAAATGCACATTTAGTCATTCACTCTGGTGCGGAACCTTTCGCTTGTAATATCTGTCAAAGAACATTTGTCAAGAGTAAGAATTTGAAAAGACACGTACTTATTCATAGTAATGATAAACCATATTCTTGTAATGTCTGTCAGAAAACATTTACATCCAACGTATATTTGGAGAGACATAAAGTCATTCACAGCGATAAAAAGGATTTTGAGTGCGACgtctgtcaaaaaaaatttaccgaCAGGACAAATTTGAGCAGACATAAACTCAGTCATAGTGATACGAAATCATATGCTTGTAGTATTTGCCAAAGAACGTTCGTCCAGCTAAAATATTTAAAGAGTCACGAACTTACTCACAGCAGtgaaaaaccatatacttgCGAAATCTGTCAGAAAACTTTTGTACAGACAAGTGCATTTAATAGACACAAACTTATCCATATCCGTGAGAAACTAAGTGCAAGCGCCTATAAGGAAAATTTTACAAATGTTGTGAATGAAAAACCATTTTCGTGTAGTACCTGTCGGAAAACATTCGCTCAAAGGAGTCATTTAAGGAGACACAAGCTCACTCACAGCGGTGAGAGACCATATAAGTGTGATGTATGTCAGAAAACTTTCGCAGAGACTGGTACGCTGGACAGGCACAAATTTATTCACGGCGGAAAGAAACCATTCTCGTGTAGTGTTTGCCAGAAAATGTTCGTTCAGAGAAATGATTTAAGAAGACACGAATTTATTCACGGCAATGAAAAACCCTACGCATGTGATGTCTGTCAAAAAACATTTGCTGAAAGTGGTAGATTGGAAAGACACAAACTTATTCATACCGGTGAGAGACCACATGAGTGCGATATCTGTCAAAAAACATTTGCTGAAAGTGGTACATTAAAAAGACACAAACGTATTCACACCGGTGAAAAACCGTATCAATGTGATATCTGTCAAAAAAGATTCGTACTGAAAGGTACTTTAAATGTACATCAACTTGTTCATGTCGGTCAAAAACCATTCGAATGTGATGTTGGCGAGAAAACTTTCACAGAGAGTAGAACTTTGAAGAAACACAAACTTAGCCATAGTGATCCGAAACCATATGCTTGTGGATGTTGTCAGAAAACGTTCGTCGAAATAAGTGATTTGGAGAGACATGAACTTATACACAACGGTGGAAAACCGTATCATAGTAGTGAAAAACAATACACCTGTAATATGTGTCAGAAATCTTTTGTTTCCAGTAGTTACTTGAAGAGACACAAACTAAGTCATAGTAATGAGGGACACTACTCGTGCGATGTGtgtcaaaaatcatttaaatggaGAAGTAATCTTGAAAAACATGAATTTATACATAGTGGAGAAAAACCATATGCTTGTGATATGTGTGAAAAAACATTCGCTTGCAAAGTTTATTTAAAGAGACATCAACGAATTCATAATGGCGAGAGACCTTATTCATGTGACATCTGCCAAAAAACATTCTCCCTTAGAACAAATTTAAAGAGCCACAAATTCATTCACAGTGGCGAAAAACCGTATGCTTGTAatgtttgtcaaaaaaaattcgCTCGGAGAGTACATTTACAGACACACAAACTTATTCACAGCGATCAAAAACCATTTGCCTGTGATGTCTGTCAGAGAACATTCGCACAAAAAGGTCATTTGGAAACTCACAAACTTAGTCACACCGGTATGAAACCATTTCAGTGTAATGTCTGTCAGAAGGCGTTCACAACGAGAGGTTCTCTAAATACACACAATCTCATTCACTTCCGTGAGACACTTGGACAGTGTGAcgataaattatttgtttgtaatatCTGCCGGAAAAAATTTGTAGATATTGTCAATTTGAGAATACACAGTATTATTCACACAAGCTTATTTACACATGTAATATCAGATGGCGAAACTttaaaaaaactcaaatcataa
- Protein Sequence
- MDNFFVEKEIEQIMIKVEPDIDMQYMTYEDSLDDSCMRKEDMKCENYMENNFLEMNDQFEQEHSYDTSVDSEENQDKYDSGKDILSGTDSLKRLNNITTEERQQDCIICHKTFKNLKSLNTHKRIHSIEKPHVCDICQKLFILKKHLERHKLIHSGEKPYSCDVCQKAFTENSNLKKHKLIHSGEKPFSCDVCQRTFVENATLIKHKRTHTKEKPYVCNVCEKTFGQITNLMRHKRIHSGHRPYSCNVCQKTFAAGSNLKRHQLLHRVEEVYTCDICQNFFFCDDDLKKHILIHSSEESYEKNLQDLNILEKQFMCSKYQKTFAGSHVTLNNINHAGERSYEYTKNQKICKDFKSLDIHKRIHNSDRPYACDVCLKTFTQNSHLKKHKIYHSGEKPFVCDICQKAFVQKSVLETHKLIHNDKKSFVCEVCKKAFVQKVHLKTHQRIHTGERPYTCDICQKTFAENNTLKKHQNTHTNERPYECKICQKTFKQIGNLKKHNFIHSKEKPNQCDVCQKTFVHKDNLNAHLVIHSGAEPFACNICQRTFVKSKNLKRHVLIHSNDKPYSCNVCQKTFTSNVYLERHKVIHSDKKDFECDVCQKKFTDRTNLSRHKLSHSDTKSYACSICQRTFVQLKYLKSHELTHSSEKPYTCEICQKTFVQTSAFNRHKLIHIREKLSASAYKENFTNVVNEKPFSCSTCRKTFAQRSHLRRHKLTHSGERPYKCDVCQKTFAETGTLDRHKFIHGGKKPFSCSVCQKMFVQRNDLRRHEFIHGNEKPYACDVCQKTFAESGRLERHKLIHTGERPHECDICQKTFAESGTLKRHKRIHTGEKPYQCDICQKRFVLKGTLNVHQLVHVGQKPFECDVGEKTFTESRTLKKHKLSHSDPKPYACGCCQKTFVEISDLERHELIHNGGKPYHSSEKQYTCNMCQKSFVSSSYLKRHKLSHSNEGHYSCDVCQKSFKWRSNLEKHEFIHSGEKPYACDMCEKTFACKVYLKRHQRIHNGERPYSCDICQKTFSLRTNLKSHKFIHSGEKPYACNVCQKKFARRVHLQTHKLIHSDQKPFACDVCQRTFAQKGHLETHKLSHTGMKPFQCNVCQKAFTTRGSLNTHNLIHFRETLGQCDDKLFVCNICRKKFVDIVNLRIHSIIHTSLFTHVISDGETLKKLKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -