Dpla000283.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drepanosiphum platanoidis
Gene Symbol
-
Assembly
GCA_948098885.1
Location
OX402533.1:6728761-6732831[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.072 5.7 7.4 0.0 2 21 421 440 420 441 0.93
2 12 0.00025 0.02 15.1 0.2 2 23 446 467 445 467 0.97
3 12 0.71 57 4.3 8.6 1 23 499 522 499 522 0.95
4 12 0.0085 0.68 10.3 1.1 2 23 540 561 539 561 0.98
5 12 1.2e-05 0.00093 19.3 0.4 2 23 570 591 569 591 0.98
6 12 0.00061 0.049 13.9 3.9 2 21 597 616 596 618 0.94
7 12 7.5e-05 0.006 16.8 0.4 2 23 625 647 624 647 0.95
8 12 0.0027 0.22 11.9 2.4 2 23 656 677 655 677 0.96
9 12 0.0077 0.62 10.4 1.4 2 23 695 717 694 717 0.95
10 12 0.00046 0.037 14.3 6.1 1 23 746 768 746 768 0.99
11 12 0.0013 0.1 12.9 2.8 1 23 774 796 774 796 0.98
12 12 2.9e-05 0.0023 18.1 1.5 1 22 800 821 800 821 0.95

Sequence Information

Coding Sequence
ATGACGCTCAGACTGGGCAGGGGCGGCTCTCAAATGTCGTTCGCCGCCAGCGTCAAGTGCTGCGTACAGATGTGCGGCTCCACCAGGGAAGAGAACCGGTCGTTGCCGTTCTACTCGTTTCCAAGCGACCCGGCACTGTGCAACGAATGGCTGAAGAAAATCCGGGTCGACGACGAGGCGTCCAAGTGCCCGGAAAAATTGCACACCACGCACATGGTGTGCTGGAAACATTTTACCGTGAACAAATCGGGCATGTCGTTGAACGTCGAGTATGACGACGGCGTCGGCGGGGGACCCGAGTCCACCGGTGCCCAAGCGCACGACAAAGATTGGATGTCGGCACTCAAGGAAGAATTCGGTGTGGAAATAATTGACGGCGATGACGCCCAATGCAGCGTGTGCGCCAGTATTTGGGACCAACCGTTGCCCGTCTACGAAGAACTCGACAAACAATTGAACTGGGAAACGCTAATGAACCATATGTCGTCTATAAATGTACAGTCTACAGACACAGAACCATTAAATATTTGTACCCAATGTGTACTAACACTCAAAGAATTCACTGACTTGCACAATATCACCAGTAAAACCAACGAATGTTTCAGTTCATCGAATTCGTCTTCTCCAGCAATAAATAGCAATACAAATCTTCCAAACTTGGAAAAAAGCACCAATTCTGAAACAATATCGCTAATCGATTCTAAAAATGACAAAGATAACAGTAATGAAAAAGAGTCTCTAAATGAATGTCAAAATATAGACAAATCAAAATTGAATGTGAATTCAAGTTCCATTAACGTTATTAATAAGGATACACGTAAGAAGATAATTAAAATTATGATGGAAAAATCAAAAAATGATATATCTATGATTAATGATCATGATACTCAAAGTTCTAGTAATACTGATAAGGTAATTCATGTCGAATTTACTGCTGAATATTTAATTTGCCATGGAAAAGAATGGGTTTATGAAATTAAAATTGAAGTAGACCAATTGAAACATTTTGAAGGTAGTGATAATCAAATTTTTGAAATCATAGTCTCAGCAATGAGAAAACAATGTATGGAGAAGAACTCTAAAATATTACCATTATCTACATTTCCATCGTGCTCAGATGGAATGTTTACTTTATCAAGTAATCAACAAGAAATACAAACAGAATCTGTTCTTATTGAAGGCAAAAACTATATGAAAATCAAGATAAATAATGAAATTGCTGATATGTTGGAGAAAAATAAACCATTAGTGAAAACTTTGGTATGTCAAAAGTGCGGTTTGCAAATAGATGACGCACAATCTCTGAATACACATATCAAATCTTGTTTTTCAAAGTCATGTCCAAGTTGTGGAGAACTTTTTGAATCGTGGAAAAATCTAATGGTACATAAAAAAGTACATAATAATGGTTTTGTTTGTCATTCATGTGGCAGTCACTTTAAAACATTCAAAAGTTTAAATTTCCATTGTAAACGACACCGAATTAAAGATCGACACTGTTGTTCCATGTGTAATTTACAATTTAATAAAGGCTTTGAACTAAGAAAACACTTACGTCAGTGTCACAAAAAACTCATTAATAAGAAAAAGCCTGAAGATGTTCAAAAGAAGAAACAAAAGTGCTCTAAATGTGAACTATGGTTCAGTAAGAAATTAGCTTTGAGTGAACATATGAGAACGCATTTACCTAAAGAAGAACGCACGAAAACATGCCCAGATTGTAAAAAAGTCTTTATTAATGCTCGTGAGTTTGCGATGCATTTACAAACTCATGTCCCACGTCTAGTTAAATGTCCAGAGTGTCCGTGTTCATTTCCGAATGAAGAACATTTAAACAATCATATTAAGTGTCACAAAATTACAGAACCTGTGTACTGCGACATTTGCCAACAAATATTTAAAACCACAGGCTCATTAAAAAAGCACATTACAAGTGTACATCAGGATGATAAGTATGTACAAAAGACATGTGCATTTTGTAATCTCATATTCCATACCAAAGAGGAATTAAAAACACATATTAACAATCATACATATGAAGAAAAAGCCAAAGCATTTGTTGGAGATGAACATGGCAAACTGCAGTGTAACGAATGCAACAAGTATTTCCTATTCAAATCGAGACTAGCCAAGCACATTATGTACTACCATAATAGTCCATGTGCTCACTGTGGTAAACACACGGAATATTTAACATACCATTATTGCAAAAAAAAAAATCGCACAGTATTAAAATATCGTTGCTCGCTTTGTACAAAACGATTTCCTTCTTGTCACGAACTCAGCACGCACGAGCGCACACATGAAATTAACTATCCTTTTCAATGCACGGTCTGCAGCAGACGGTACTCGAAAATGTTTGCATTAAAAAGTCATAGGCAATCACATAACAATATACATGTCTGTAGTATGTGTGGCTTAACATATAAAAATCTGTACCTTCTGAAGAAACATATGAAAAAATGTACTGAAAACAATAATGTCGGCGATTATGACCCAGATCAAATAAATAATTCAATCAAATTATCAGTCATTAATAATCCATCGATTCCAAACCACTCTATCCCTTTGACTGCTATACCGATTGTGATTCCGATTAAAGATGAAAATGGTTATTTCATTTCTGCTACATCTCTCACTAATATTCCACATTTAGTTGGCGTTCCGATCATTGGTCATAACTTACAGTAA
Protein Sequence
MTLRLGRGGSQMSFAASVKCCVQMCGSTREENRSLPFYSFPSDPALCNEWLKKIRVDDEASKCPEKLHTTHMVCWKHFTVNKSGMSLNVEYDDGVGGGPESTGAQAHDKDWMSALKEEFGVEIIDGDDAQCSVCASIWDQPLPVYEELDKQLNWETLMNHMSSINVQSTDTEPLNICTQCVLTLKEFTDLHNITSKTNECFSSSNSSSPAINSNTNLPNLEKSTNSETISLIDSKNDKDNSNEKESLNECQNIDKSKLNVNSSSINVINKDTRKKIIKIMMEKSKNDISMINDHDTQSSSNTDKVIHVEFTAEYLICHGKEWVYEIKIEVDQLKHFEGSDNQIFEIIVSAMRKQCMEKNSKILPLSTFPSCSDGMFTLSSNQQEIQTESVLIEGKNYMKIKINNEIADMLEKNKPLVKTLVCQKCGLQIDDAQSLNTHIKSCFSKSCPSCGELFESWKNLMVHKKVHNNGFVCHSCGSHFKTFKSLNFHCKRHRIKDRHCCSMCNLQFNKGFELRKHLRQCHKKLINKKKPEDVQKKKQKCSKCELWFSKKLALSEHMRTHLPKEERTKTCPDCKKVFINAREFAMHLQTHVPRLVKCPECPCSFPNEEHLNNHIKCHKITEPVYCDICQQIFKTTGSLKKHITSVHQDDKYVQKTCAFCNLIFHTKEELKTHINNHTYEEKAKAFVGDEHGKLQCNECNKYFLFKSRLAKHIMYYHNSPCAHCGKHTEYLTYHYCKKKNRTVLKYRCSLCTKRFPSCHELSTHERTHEINYPFQCTVCSRRYSKMFALKSHRQSHNNIHVCSMCGLTYKNLYLLKKHMKKCTENNNVGDYDPDQINNSIKLSVINNPSIPNHSIPLTAIPIVIPIKDENGYFISATSLTNIPHLVGVPIIGHNLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00469010;
90% Identity
iTF_00469010;
80% Identity
iTF_00469010;