Dpla012765.1
Basic Information
- Insect
- Drepanosiphum platanoidis
- Gene Symbol
- -
- Assembly
- GCA_948098885.1
- Location
- OX402538.1:2838508-2842065[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0044 0.35 11.2 0.2 1 23 175 198 175 198 0.92 2 13 0.0062 0.5 10.7 4.9 3 23 249 269 249 269 0.98 3 13 2.3 1.8e+02 2.7 0.4 1 23 278 301 278 301 0.89 4 13 0.045 3.6 8.0 1.7 1 23 367 390 367 390 0.92 5 13 0.024 1.9 8.9 0.8 1 23 397 420 397 420 0.93 6 13 0.0012 0.098 13.0 6.1 3 23 427 447 425 447 0.98 7 13 0.00018 0.014 15.6 0.1 1 23 451 473 451 473 0.97 8 13 0.00024 0.019 15.2 0.2 1 23 479 501 479 501 0.98 9 13 0.0019 0.16 12.3 1.6 1 23 507 529 507 529 0.98 10 13 1.6e-05 0.0013 18.9 0.2 1 23 535 557 535 557 0.98 11 13 0.0013 0.11 12.9 0.2 1 23 563 585 563 585 0.98 12 13 3.8e-06 0.00031 20.8 1.4 1 23 591 613 591 613 0.99 13 13 2.1 1.7e+02 2.8 3.5 1 20 619 638 619 640 0.94
Sequence Information
- Coding Sequence
- ATGAAAAGCAAATTGGGACTAGACTTCGATGCACAGTGTAGACTATGTCTGCTAAAAGCACCTAAACTCCGTCCGATATTCGATGACAACGTCAATTTTCCATACCGCTTCAAGTTGTGCGTTGGGCTTGAGTTTCGCAAGTGTGATCCGGGTCCGACACACATGTGTGTCGATTGTCTAAGTCAGCTGGAGAATTGGGAAAAATTCAAAGAAATGTGTATCACCTCAAACAAATGTATTCAAGAACAATTAAAAAAGACCGAAGAGGACAAGTTGAATTTGAATAATGACCAACCTGAGAGCTTAAAGGACAGCCAAGAAGCAGAGGAACATGATGACAGTAACGATAGTACGTTTGACAACAAATTAAACAATCAAGACTCAGATAATGATTCTTGCAGATTAAAGTCTAAGTCGCCAATTTCAATAACAGCTCGAAAAGCATATCCGAGAGCTGTTAAATTAAATGGGAAAGCTTCGTCAAAAGTGACATGTGTTAAAAATTCAAATCGAAAAAAACTTTACGAGTGTGGGACATGTTCTATAGGTTTCACTGAAAAAGAATCATTGTATAATCATTTAACTGATATCCATAGTTTGGAAGAAAATAACACTCCGCATTACTGTCTAATATGTTATAAAGGATATTTTAGCTTTAAAATTTACCAAGATCATTTGACCGCAGAACAAGATATTCACGGTACTGTTCAAATGCAGGAAAGAATAAAAGATTGTGCAATTGGCTGTGGCTTGTGTAATTGTAAATTCAGCCGAACAACCAGTCTGTATCGACACCTCAGGAACCACGCGATGAATAAAGACCTTATGCCTTATTTGTGTTCTTTTTGCCAAGTGGGATTTCTGGATAAGTACAGTCTTTACTTGCATGCATCAAATGAACATCAGGCTGTAACTATCACCTTACAGGAACCTAATGAGGAATGCAGCGAGCGTCTGGTGAGAACGGACCCGGTGCCGGCGGACGACGGCGGCGGCGACCTGGCGATCACGACCAAGCGCAGCGTGAAGAAGCTGCGCACCGCGGAGGACAAGCGGGCCAAGTATCGCGAGCACTACCGGCGGTTCCAGACCaagacgtacgcgtgcgagttctgcgacgcgacgtacacgcggttctgcgacctgtccagccacgaccggaccgcgcacgacgacatggccaaggagcacagctgcccgacgtgcggcaagctgttcctgaccgccggccggctgcaggtgcaccgggactcgttccacgcggacaagccgttcggctgcgacgtgtgcaacgtgcgctgcaagtccaagcacacgctgcgcacgcacatgcgcaagcacagcggcacgttcgcgtgccagcactgcggcctgaccacggccagcaacgcggcgctggtgtcgcacgtgcgcgtgcacaccggcgagaagccgttcgtgtgcgacatgtgcggcaacgcgtacgcgtccaagctcggtctcacgtcgcacaagcgcacgcaccggcacgaggcgctgttccggtgcgacgtgtgcggctacaccgggtccagccacagttccatctacatccaccggcagacgcacagcggcgacaagccgtacgtgtgcgacgtgtgcggcaagacgttcaagatcaaggtgcgcctggccgaccaccagaagatccacttcgccgcgcgcaagtacgcgtgcgaggtgtgcgacaaggcgttcctggcccggtaccagctggcgcagcactcgcgcacccactcgggcgagaagccgttccagtgtcacctgtgcgccaagtcgttcgcgcgccgcgacggcctgtccgagcacgtgcgcacgcacaccggcgagaagcggtacacgtgtctcgagtgcttcggcacgttctcgttctacaagacgatgaagaaccacaagtgcgccgccaagcgtcccgttgccgaggtcgcgcggccgtcgtctccagcggccgtcggcttgccgtcttccgcgcccgaggtggacgcggtcggctcgccgttgccggTTCCCGCCGCCGCCGCCGTCTGGCAGCCCTGCGGCAGTTGA
- Protein Sequence
- MKSKLGLDFDAQCRLCLLKAPKLRPIFDDNVNFPYRFKLCVGLEFRKCDPGPTHMCVDCLSQLENWEKFKEMCITSNKCIQEQLKKTEEDKLNLNNDQPESLKDSQEAEEHDDSNDSTFDNKLNNQDSDNDSCRLKSKSPISITARKAYPRAVKLNGKASSKVTCVKNSNRKKLYECGTCSIGFTEKESLYNHLTDIHSLEENNTPHYCLICYKGYFSFKIYQDHLTAEQDIHGTVQMQERIKDCAIGCGLCNCKFSRTTSLYRHLRNHAMNKDLMPYLCSFCQVGFLDKYSLYLHASNEHQAVTITLQEPNEECSERLVRTDPVPADDGGGDLAITTKRSVKKLRTAEDKRAKYREHYRRFQTKTYACEFCDATYTRFCDLSSHDRTAHDDMAKEHSCPTCGKLFLTAGRLQVHRDSFHADKPFGCDVCNVRCKSKHTLRTHMRKHSGTFACQHCGLTTASNAALVSHVRVHTGEKPFVCDMCGNAYASKLGLTSHKRTHRHEALFRCDVCGYTGSSHSSIYIHRQTHSGDKPYVCDVCGKTFKIKVRLADHQKIHFAARKYACEVCDKAFLARYQLAQHSRTHSGEKPFQCHLCAKSFARRDGLSEHVRTHTGEKRYTCLECFGTFSFYKTMKNHKCAAKRPVAEVARPSSPAAVGLPSSAPEVDAVGSPLPVPAAAAVWQPCGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -